myRT

myRT report for GCA_014170435.1_ASM1417043v1

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Seq: LZZY01000007.1 Pseudomonas sp. UMC76 PC76_contig000007, whole genome shotgun sequence (164930 bp)
Overview 1 RT 1: 50987-59840 bp Neighborhood of RT #1 [50987, 59866] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 50987-52243 bp Feature: domain Description: PRK10770 Location: 51041-52235 bp Feature: domain Description: PRK1 0770 Location: 51 041 -52235 bp Feature: gene Location: 52260-55061 bp Feature: domain Description: LptD Location: 52629-55047 bp Feature: domain Description: LptD Location: 52629-55047 bp Feature: gene Location: 55194-56906 bp Feature: domain Description: RVT_N Location: 55251-55494 bp Feature: domain Description: RVT_N Location: 55251 -55494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55539-56175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55539-561 75 bp Feature: domain Description: YkfC Location: 56385-56535 bp Feature: domain Description: YkfC Location: 56385-56535 bp Feature: domain Description: HNH Note: nucleases Location: 56712-56850 bp Feature: domain Description: HNH Note: nucleases Location: 5671 2-56850 bp Feature: gene Location: 58179-59195 bp Feature: domain Description: COG3178 Location: 58185-59178 bp Feature: domain Description: COG31 78 Location: 581 85-591 78 bp Feature: gene Location: 59192-59866 bp Feature: domain Description: NTP_transferase_like_1 Location: 59198-59840 bp Feature: domain Description: NTP_transferase_like_1 Location: 591 98-59840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: LZZY01000013.1 Pseudomonas sp. UMC76 PC76_contig000013, whole genome shotgun sequence (133229 bp)
Overview 1 RT 1: 64061-70523 bp Neighborhood of RT #1 [64061, 70537] AAA_15 TOPRIM_OLD RVT-UG17 SLATT_5 HEPN_RiboL-PSP Feature: gene Location: 64061-66478 bp Feature: domain Description: AAA_15 Location: 64064-65384 bp Feature: domain Description: AAA_15 Location: 64064-65384 bp Feature: domain Description: TOPRIM_OLD Location: 65549-65795 bp Feature: domain Description: TOPRIM_OLD Location: 65549-65795 bp Feature: gene Location: 66825-67631 bp Feature: gene Location: 67803-69167 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 68031-68634 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 68031-68634 bp Feature: gene Location: 69164-69718 bp Feature: domain Description: SLATT_5 Location: 69170-69689 bp Feature: domain Description: SLATT_5 Location: 69170-69689 bp Feature: gene Location: 70124-70537 bp Feature: domain Description: HEPN_RiboL-PSP Location: 70127-70523 bp Feature: domain Description: HEPN_RiboL-PSP Location: 7012 7-7052 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-UG17, SLATT_5 (pfam18160), HEPN_RiboL-PSP (pfam18735)

Seq: LZZY01000022.1 Pseudomonas sp. UMC76 PC76_contig000022, whole genome shotgun sequence (595585 bp)
Overview 1 RT 1: 376434-379641 bp Neighborhood of RT #1 [376434, 379655] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 376434-376835 bp Feature: gene Location: 376846-377280 bp Feature: gene Location: 377277-378578 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 377661-378345 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 77661-3 783 45 bp Feature: gene Location: 378642-379037 bp Feature: domain Description: Avd_like Location: 378708-379014 bp Feature: domain Description: Avd_like Location: 3 78708-3 79014 bp Feature: gene Location: 379056-379655 bp Feature: domain Description: DUF1566 Location: 379485-379641 bp Feature: domain Description: DUF1566 Location: 3 79485-3 79641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)