myRT

myRT report for GCA_014172355.1_ASM1417235v1

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Seq: JACIVJ010000001.1 Escherichia coli strain 176.1 1, whole genome shotgun sequence (4626270 bp)
Overview 1 RT 1: 1416803-1420505 bp 2 RT 2: 1534121-1540562 bp 3 RT 3: 3951492-3956168 bp 4 RT 4: 4352197-4358571 bp Neighborhood of RT #1 [1416803, 1420615] InsE PHA02517 RVT-GII GIIM PHA02517 Ogr_Delta Neighborhood of RT #2 [1534121, 1540562] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Neighborhood of RT #3 [3951492, 3956168] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [4352197, 4358594] Psu PRK09678 RVT-UG8 PBP2_CrgA_like_5 XdhC Feature: gene Location: 1416803-1417105 bp Feature: domain Description: InsE Location: 1416812-1417094 bp Feature: domain Description: InsE Location: 1 41 681 2-1 41 7094 bp Feature: gene Location: 1417132-1417557 bp Feature: domain Description: PHA02517 Location: 1417156-1417492 bp Feature: domain Description: PHA0251 7 Location: 1 41 71 56-1 41 7492 bp Feature: gene Location: 1418149-1419672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1418422-1419154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 8422-1 41 91 54 bp Feature: domain Description: GIIM Note: maturase Location: 1419229-1419427 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 9229-1 41 9427 bp Feature: gene Location: 1419837-1420241 bp Feature: domain Description: PHA02517 Location: 1419840-1420230 bp Feature: domain Description: PHA0251 7 Location: 1 41 9840-1 420230 bp Feature: gene Location: 1420355-1420615 bp Feature: domain Description: Ogr_Delta Location: 1420364-1420505 bp Feature: domain Description: Ogr_Delta Location: 1 420364-1 420505 bp Feature: gene Location: 1534121-1534426 bp Feature: gene Location: 1535298-1537574 bp Feature: domain Description: AAA_15 Location: 1535331-1536339 bp Feature: domain Description: AAA_1 5 Location: 1 535331 -1 536339 bp Feature: gene Location: 1537689-1538789 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1537869-1538403 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 537869-1 538403 bp Feature: gene Location: 1539445-1540281 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1539934-1540105 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 539934-1 5401 05 bp Feature: gene Location: 1540311-1540562 bp Feature: gene Location: 3951492-3952643 bp Feature: domain Description: HTH_38 Location: 3951501-3951615 bp Feature: domain Description: HTH_38 Location: 3951 501 -3951 61 5 bp Feature: domain Description: Tra8 Location: 3951651-3952632 bp Feature: domain Description: Tra8 Location: 3951 651 -3952632 bp Feature: gene Location: 3952719-3953144 bp Feature: domain Description: PHA02517 Location: 3952743-3953079 bp Feature: domain Description: PHA0251 7 Location: 3952743-3953079 bp Feature: gene Location: 3953736-3955259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3954009-3954741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3954009-3954741 bp Feature: domain Description: GIIM Note: maturase Location: 3954816-3955014 bp Feature: domain Description: GIIM Note: maturase Location: 395481 6-395501 4 bp Feature: gene Location: 3955424-3955828 bp Feature: domain Description: PHA02517 Location: 3955427-3955808 bp Feature: domain Description: PHA0251 7 Location: 3955427-3955808 bp Feature: gene Location: 3955911-3956168 bp Feature: gene Location: 4352197-4352748 bp Feature: domain Description: Psu Location: 4352218-4352728 bp Feature: domain Description: Psu Location: 435221 8-4352728 bp Feature: gene Location: 4352754-4353026 bp Feature: domain Description: PRK09678 Location: 4352763-4352928 bp Feature: domain Description: PRK09678 Location: 4352763-4352928 bp Feature: gene Location: 4354689-4356707 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4355262-4355715 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4355262-435571 5 bp Feature: gene Location: 4357249-4357659 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 4357321-4357633 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 4357321 -4357633 bp Feature: gene Location: 4357638-4358594 bp Feature: domain Description: XdhC Location: 4357716-4358571 bp Feature: domain Description: XdhC Location: 435771 6-4358571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Ogr_Delta (pfam04606), AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_38 (pfam13936), Tra8 (COG2826)
Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG8, PBP2_CrgA_like_5 (cd08474), XdhC (COG1975)