myRT

myRT report for GCA_014174405.1_ASM1417440v1

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Seq: JACEGA010000001.1 Lachnospiraceae bacterium MD1 NODE_1+2_length_4147987, whole genome shotgun sequence (4147987 bp)
Overview 1 RT 1: 2409925-2412634 bp 2 RT 2: 2421182-2427946 bp 3 RT 3: 2649586-2653470 bp 4 RT 4: 3244773-3252555 bp Neighborhood of RT #1 [2409925, 2412634] Adenyl_transf Acetyltransf_1 RVT-GII GIIM group_II_RT_mat Neighborhood of RT #2 [2421182, 2428005] RpoE RVT-GII GIIM TrmA PflX Neighborhood of RT #3 [2649586, 2653470] LRR_3 RVT-GII GIIM Neighborhood of RT #4 [3244773, 3252566] DUF4423 RVT-Retrons Trypsin_2 pyru_phos_dikin PRK04173 Feature: gene Location: 2409925-2410104 bp Feature: domain Description: Adenyl_transf Location: 2409940-2410078 bp Feature: domain Description: Adenyl_transf Location: 2409940-241 0078 bp Feature: gene Location: 2410161-2410811 bp Feature: domain Description: Acetyltransf_1 Location: 2410359-2410644 bp Feature: domain Description: Acetyltransf_1 Location: 241 0359-241 0644 bp Feature: gene Location: 2411338-2412273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2411344-2411914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 1 344-241 1 91 4 bp Feature: domain Description: GIIM Note: maturase Location: 2411992-2412208 bp Feature: domain Description: GIIM Note: maturase Location: 241 1 992-241 2208 bp Feature: gene Location: 2412349-2412492 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2412364-2412487 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 241 2364-241 2487 bp Feature: gene Location: 2412500-2412634 bp Feature: gene Location: 2421182-2422627 bp Feature: gene Location: 2422639-2423214 bp Feature: domain Description: RpoE Location: 2422699-2423203 bp Feature: domain Description: RpoE Location: 2422699-2423203 bp Feature: gene Location: 2423752-2425056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2424058-2424697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2424058-2424697 bp Feature: domain Description: GIIM Note: maturase Location: 2424775-2425003 bp Feature: domain Description: GIIM Note: maturase Location: 2424775-2425003 bp Feature: gene Location: 2425529-2427016 bp Feature: domain Description: TrmA Location: 2425862-2426975 bp Feature: domain Description: TrmA Location: 2425862-2426975 bp Feature: gene Location: 2427022-2428005 bp Feature: domain Description: PflX Location: 2427112-2427946 bp Feature: domain Description: PflX Location: 24271 1 2-2427946 bp Feature: gene Location: 2649586-2649831 bp Feature: gene Location: 2649849-2650307 bp Feature: domain Description: LRR_3 Location: 2650011-2650278 bp Feature: domain Description: LRR_3 Location: 265001 1 -2650278 bp Feature: gene Location: 2651502-2652800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2651802-2652441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2651 802-2652441 bp Feature: domain Description: GIIM Note: maturase Location: 2652519-2652741 bp Feature: domain Description: GIIM Note: maturase Location: 265251 9-2652741 bp Feature: gene Location: 2652816-2653043 bp Feature: gene Location: 2653228-2653470 bp Feature: gene Location: 3244773-3245066 bp Feature: gene Location: 3245308-3245865 bp Feature: domain Description: DUF4423 Location: 3245476-3245722 bp Feature: domain Description: DUF4423 Location: 3245476-3245722 bp Feature: gene Location: 3246124-3247818 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3246280-3246874 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3246280-3246874 bp Feature: domain Description: Trypsin_2 Location: 3247291-3247711 bp Feature: domain Description: Trypsin_2 Location: 3247291 -324771 1 bp Feature: gene Location: 3248230-3250851 bp Feature: domain Description: pyru_phos_dikin Location: 3248239-3250810 bp Feature: domain Description: pyru_phos_dikin Location: 3248239-325081 0 bp Feature: gene Location: 3251169-3252566 bp Feature: domain Description: PRK04173 Location: 3251187-3252555 bp Feature: domain Description: PRK041 73 Location: 3251 1 87-3252555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Adenyl_transf (pfam04439), Acetyltransf_1 (pfam00583), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), RpoE (COG3343), TrmA (COG2265), PflX (COG1313), LRR_3 (sd00036), DUF4423 (pfam14394)
RVT-Retrons, Trypsin_2 (pfam13365), pyru_phos_dikin (TIGR01828), PRK04173 (glycyl-tRNA synthetase; Provisional)