myRT

myRT report for GCA_014174495.1_ASM1417449v1

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Seq: JACJHR010000014.1 Amycolatopsis echigonensis strain JCM 21831 14, whole genome shotgun sequence (136110 bp)
Overview 1 RT 1: 128054-133811 bp Neighborhood of RT #1 [128054, 133811] Voltage_gated_ClC CBS_pair_Sp... HTH_MARR RVT-Retrons Feature: gene Location: 128054-129598 bp Feature: domain Description: Voltage_gated_ClC Location: 128090-129236 bp Feature: domain Description: Voltage_gated_ClC Location: 1 28090-1 29236 bp Feature: domain Description: CBS_pair_Sp... Location: 129362-129530 bp Feature: domain Description: CBS_pair_Sp... Location: 1 29362-1 29530 bp Feature: gene Location: 129649-130113 bp Feature: domain Description: HTH_MARR Location: 129736-130012 bp Feature: domain Description: HTH_MARR Location: 1 29736-1 3001 2 bp Feature: gene Location: 130343-131416 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130544-131159 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 30544-1 31 1 59 bp Feature: gene Location: 132789-132983 bp Feature: gene Location: 133455-133811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Voltage_gated_ClC (cl02915), CBS_pair_Sp..., HTH_MARR (smart00347), RVT-Retrons

Seq: JACJHR010000164.1 Amycolatopsis echigonensis strain JCM 21831 164, whole genome shotgun sequence (8260 bp)
Overview 1 RT 1: 2-4390 bp Neighborhood of RT #1 [2, 4425] PRK09183 COG4584 RVT-GII GIIM InsE PHA02517 Feature: gene Location: 2-658 bp Feature: domain Description: PRK09183 Location: 20-653 bp Feature: domain Description: PRK09183 Location: 2 0-653 bp Feature: gene Location: 690-2054 bp Feature: domain Description: COG4584 Location: 693-1413 bp Feature: domain Description: COG4584 Location: 693-1413 bp Feature: gene Location: 2195-3736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2885-3545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 885-3545 bp Feature: domain Description: GIIM Note: maturase Location: 3626-3734 bp Feature: domain Description: GIIM Note: maturase Location: 362 6-3734 bp Feature: gene Location: 3254-3544 bp Feature: domain Description: InsE Location: 3275-3533 bp Feature: domain Description: InsE Location: 32 75-3533 bp Feature: gene Location: 3592-4425 bp Feature: domain Description: PHA02517 Location: 3610-4390 bp Feature: domain Description: PHA02 517 Location: 3610-4390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), RVT-GII, GIIM (pfam08388), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JACJHR010000065.1 Amycolatopsis echigonensis strain JCM 21831 65, whole genome shotgun sequence (51003 bp)
Overview 1 RT 1: 21598-24795 bp Neighborhood of RT #1 [21598, 24795] YfmG RVT-CRISPR-like QueC Feature: gene Location: 21598-22059 bp Feature: gene Location: 22056-22613 bp Feature: domain Description: YfmG Location: 22182-22608 bp Feature: domain Description: YfmG Location: 22182-22608 bp Feature: gene Location: 22619-23398 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 22820-23357 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 22820-23 3 57 bp Feature: gene Location: 23600-24304 bp Feature: domain Description: QueC Location: 23636-24296 bp Feature: domain Description: QueC Location: 23 63 6-24296 bp Feature: gene Location: 24307-24795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-CRISPR, QueC (pfam06508)