myRT

myRT report for GCA_014190745.1_ASM1419074v1

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Seq: JACHVO010000005.1 Chitinophaga sancti strain 1232 Ga0365426_05, whole genome shotgun sequence (621026 bp)
Overview 1 RT 1: 373175-382372 bp Neighborhood of RT #1 [373175, 382377] WGR_DNA_ligase HEAT_2 RVT-Retrons TMAO_torS Feature: gene Location: 373175-376417 bp Feature: domain Description: WGR_DNA_ligase Location: 373190-373406 bp Feature: domain Description: WGR_DNA_ligase Location: 3731 90-373406 bp Feature: domain Description: HEAT_2 Location: 373553-373757 bp Feature: domain Description: HEAT_2 Location: 373553-373757 bp Feature: gene Location: 376429-378075 bp Feature: gene Location: 378529-380025 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 379075-379690 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 379075-379690 bp Feature: gene Location: 380301-380498 bp Feature: gene Location: 380578-382377 bp Feature: domain Description: TMAO_torS Location: 381256-382372 bp Feature: domain Description: TMAO_torS Location: 381 256-382372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), RVT-Retrons, TMAO_torS (TIGR02956)

Seq: JACHVO010000006.1 Chitinophaga sancti strain 1232 Ga0365426_06, whole genome shotgun sequence (277786 bp)
Overview 1 RT 1: 10656-16919 bp 2 RT 2: 21075-25026 bp Neighborhood of RT #1 [10656, 16948] HNHc RVT-GII GIIM RVT-GII GIIM RVT_N RVT-GII DDE_Tnp_IS66 Neighborhood of RT #2 [21075, 25026] COG4584 COG4584 GIIM RVT-GII GIIM Feature: gene Location: 10656-10952 bp Feature: domain Description: HNHc Note: nucleases Location: 10698-10839 bp Feature: domain Description: HNHc Note: nucleases Location: 10698-10839 bp Feature: gene Location: 10958-11113 bp Feature: gene Location: 11801-12919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12014-12674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 014-12 674 bp Feature: domain Description: GIIM Note: maturase Location: 12752-12896 bp Feature: domain Description: GIIM Note: maturase Location: 12 752 -12 896 bp Feature: gene Location: 13173-14420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13377-14034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13377-14034 bp Feature: domain Description: GIIM Note: maturase Location: 14121-14322 bp Feature: domain Description: GIIM Note: maturase Location: 1412 1-1432 2 bp Feature: gene Location: 14668-14808 bp Feature: gene Location: 15097-15291 bp Feature: gene Location: 15403-16023 bp Feature: RT Description: RVT_N Location: 15406-15538 bp Feature: RT Description: RVT_N Location: 15406-15538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15580-16003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15580-16003 bp Feature: gene Location: 16533-16676 bp Feature: gene Location: 16718-16948 bp Feature: domain Description: DDE_Tnp_IS66 Location: 16724-16919 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1672 4-16919 bp Feature: gene Location: 21075-22643 bp Feature: domain Description: COG4584 Location: 21117-21213 bp Feature: domain Description: COG4584 Location: 2 1117-2 12 13 bp Feature: domain Description: COG4584 Location: 21354-21948 bp Feature: domain Description: COG4584 Location: 2 1354-2 1948 bp Feature: gene Location: 22879-23076 bp Feature: domain Description: GIIM Note: maturase Location: 22924-23035 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 92 4-2 3035 bp Feature: gene Location: 23226-23564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23235-23391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 35-2 3391 bp Feature: domain Description: GIIM Note: maturase Location: 23457-23562 bp Feature: domain Description: GIIM Note: maturase Location: 2 3457-2 3562 bp Feature: gene Location: 23647-23829 bp Feature: gene Location: 24799-25026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), DDE_Tnp_IS66 (pfam03050), COG4584 (Transposase )

Seq: JACHVO010000011.1 Chitinophaga sancti strain 1232 Ga0365426_11, whole genome shotgun sequence (4806 bp)
Overview 1 RT 1: 481-4710 bp Neighborhood of RT #1 [481, 4715] TnpB_IS66 DDE_Tnp_IS66 RVT_N RVT-GII YkfC HNH DDE_Tnp_IS66 Feature: gene Location: 481-837 bp Feature: domain Description: TnpB_IS66 Location: 508-799 bp Feature: domain Description: TnpB_IS66 Location: 508-799 bp Feature: gene Location: 964-1992 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1582-1981 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1582-1981 bp Feature: gene Location: 2589-4325 bp Feature: RT Description: RVT_N Location: 2637-2877 bp Feature: RT Description: RVT_N Location: 263 7-2877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2925-3603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2925-3 603 bp Feature: domain Description: YkfC Location: 3738-3924 bp Feature: domain Description: YkfC Location: 3 73 8-3 924 bp Feature: domain Description: HNH Note: nucleases Location: 4155-4284 bp Feature: domain Description: HNH Note: nucleases Location: 4155-4284 bp Feature: gene Location: 4473-4715 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4476-4710 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4476-4710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)