myRT

myRT report for GCA_014190805.1_ASM1419080v1

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Seq: JACHVQ010000001.1 Flexivirga oryzae strain DSM 105369 Ga0310456_01, whole genome shotgun sequence (2766215 bp)
Overview 1 RT 1: 160417-164361 bp 2 RT 2: 740033-745567 bp 3 RT 3: 1117194-1122619 bp 4 RT 4: 1859227-1864193 bp 5 RT 5: 2605524-2609776 bp Neighborhood of RT #1 [160417, 164366] Mu-transpos_C ExeA RVT-GII InsE RmlD_sub_bind Neighborhood of RT #2 [740033, 745701] DUF222 HNHc PHA02517 RVT-GII GIIM InsE COG3547 COG3547 Neighborhood of RT #3 [1117194, 1122619] DDE_Tnp_1_4 DDE_Tnp_1 RVT_N RVT-GII GIIM Neighborhood of RT #4 [1859227, 1864193] Transposase_20 PHA02517 RVT-GII GIIM Neighborhood of RT #5 [2605524, 2609802] InsE RVT-GII GIIM PHA02517 DEDD_Tnp_IS110 Feature: gene Location: 160417-161049 bp Feature: domain Description: Mu-transpos_C Location: 160573-160726 bp Feature: domain Description: Mu-transpos_C Location: 1 60573-1 60726 bp Feature: gene Location: 161088-161861 bp Feature: domain Description: ExeA Location: 161091-161832 bp Feature: domain Description: ExeA Location: 1 61 091 -1 61 832 bp Feature: gene Location: 161890-163008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162214-162901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6221 4-1 62901 bp Feature: gene Location: 163593-163946 bp Feature: domain Description: InsE Location: 163608-163902 bp Feature: domain Description: InsE Location: 1 63608-1 63902 bp Feature: gene Location: 164004-164366 bp Feature: domain Description: RmlD_sub_bind Location: 164010-164361 bp Feature: domain Description: RmlD_sub_bind Location: 1 6401 0-1 64361 bp Feature: gene Location: 740033-741301 bp Feature: domain Description: DUF222 Location: 740210-740954 bp Feature: domain Description: DUF222 Location: 74021 0-740954 bp Feature: domain Description: HNHc Note: nucleases Location: 741068-741209 bp Feature: domain Description: HNHc Note: nucleases Location: 741 068-741 209 bp Feature: gene Location: 741307-742317 bp Feature: domain Description: PHA02517 Location: 741490-742300 bp Feature: domain Description: PHA0251 7 Location: 741 490-742300 bp Feature: gene Location: 742350-743804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742674-743364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742674-743364 bp Feature: domain Description: GIIM Note: maturase Location: 743433-743667 bp Feature: domain Description: GIIM Note: maturase Location: 743433-743667 bp Feature: gene Location: 744389-744742 bp Feature: domain Description: InsE Location: 744404-744698 bp Feature: domain Description: InsE Location: 744404-744698 bp Feature: gene Location: 744814-745701 bp Feature: domain Description: COG3547 Location: 744835-744949 bp Feature: domain Description: COG3547 Location: 744835-744949 bp Feature: domain Description: COG3547 Location: 745015-745567 bp Feature: domain Description: COG3547 Location: 74501 5-745567 bp Feature: gene Location: 1117194-1118552 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1117200-1118526 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 1 1 7200-1 1 1 8526 bp Feature: gene Location: 1118698-1119567 bp Feature: domain Description: DDE_Tnp_1 Location: 1118740-1119385 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 1 8740-1 1 1 9385 bp Feature: gene Location: 1119667-1121223 bp Feature: RT Description: RVT_N Location: 1119754-1119991 bp Feature: RT Description: RVT_N Location: 1 1 1 9754-1 1 1 9991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1120051-1120708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 20051 -1 1 20708 bp Feature: domain Description: GIIM Note: maturase Location: 1120765-1120999 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 20765-1 1 20999 bp Feature: gene Location: 1121816-1122619 bp Feature: gene Location: 1859227-1859634 bp Feature: domain Description: Transposase_20 Location: 1859230-1859413 bp Feature: domain Description: Transposase_20 Location: 1 859230-1 85941 3 bp Feature: gene Location: 1859797-1860807 bp Feature: domain Description: PHA02517 Location: 1859980-1860790 bp Feature: domain Description: PHA0251 7 Location: 1 859980-1 860790 bp Feature: gene Location: 1860840-1862294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1861164-1861854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 861 1 64-1 861 854 bp Feature: domain Description: GIIM Note: maturase Location: 1861923-1862157 bp Feature: domain Description: GIIM Note: maturase Location: 1 861 923-1 8621 57 bp Feature: gene Location: 1863107-1863514 bp Feature: gene Location: 1863525-1864193 bp Feature: gene Location: 2605524-2605829 bp Feature: gene Location: 2605983-2606336 bp Feature: domain Description: InsE Location: 2605998-2606292 bp Feature: domain Description: InsE Location: 2605998-2606292 bp Feature: gene Location: 2606921-2608375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2607248-2607935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2607248-2607935 bp Feature: domain Description: GIIM Note: maturase Location: 2608004-2608238 bp Feature: domain Description: GIIM Note: maturase Location: 2608004-2608238 bp Feature: gene Location: 2608408-2609418 bp Feature: domain Description: PHA02517 Location: 2608591-2609401 bp Feature: domain Description: PHA0251 7 Location: 2608591 -2609401 bp Feature: gene Location: 2609440-2609802 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2609467-2609776 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 2609467-2609776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mu-transpos_C (pfam09299), ExeA (COG3267), RVT-GII, InsE (COG2963), RmlD_sub_bind (pfam04321), DUF222 (pfam02720), HNHc (smart00507), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), COG3547 (Transposase )
DDE_Tnp_1_4 (pfam13701), DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), Transposase_20 (pfam02371), DEDD_Tnp_IS110 (pfam01548)

Seq: JACHVQ010000002.1 Flexivirga oryzae strain DSM 105369 Ga0310456_02, whole genome shotgun sequence (829728 bp)
Overview 1 RT 1: 447327-453136 bp Neighborhood of RT #1 [447327, 453270] GH25_CH-type InsE RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 447327-448169 bp Feature: domain Description: GH25_CH-type Location: 447564-448146 bp Feature: domain Description: GH2 5_CH-type Location: 447564-448146 bp Feature: gene Location: 448427-448780 bp Feature: domain Description: InsE Location: 448442-448736 bp Feature: domain Description: InsE Location: 448442 -448736 bp Feature: gene Location: 449365-450819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449689-450379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449689-450379 bp Feature: domain Description: GIIM Note: maturase Location: 450448-450682 bp Feature: domain Description: GIIM Note: maturase Location: 450448-450682 bp Feature: gene Location: 450852-451862 bp Feature: domain Description: PHA02517 Location: 451035-451845 bp Feature: domain Description: PHA02 517 Location: 451035-451845 bp Feature: gene Location: 452035-453270 bp Feature: domain Description: COG3547 Location: 452062-453136 bp Feature: domain Description: COG3547 Location: 452 062 -453136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH25_CH-type (cd06412), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase )