myRT

myRT report for GCA_014192335.1_ASM1419233v1

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Seq: JACHXU010000001.1 Rhodopirellula rubra strain CECT 8075 Ga0372409_01, whole genome shotgun sequence (688126 bp)
Overview 1 RT 1: 67956-73655 bp Neighborhood of RT #1 [67956, 73655] RVT-Retrons Feature: gene Location: 67956-69839 bp Feature: gene Location: 69872-70483 bp Feature: gene Location: 70480-71769 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70873-71530 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70873-71 530 bp Feature: gene Location: 72140-73021 bp Feature: gene Location: 73446-73655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JACHXU010000002.1 Rhodopirellula rubra strain CECT 8075 Ga0372409_02, whole genome shotgun sequence (574196 bp)
Overview 1 RT 1: 444473-450967 bp Neighborhood of RT #1 [444473, 451005] HTH_12 RVT-Retrons DUF262 DUF1524 RAMA Feature: gene Location: 444473-444961 bp Feature: gene Location: 445104-445694 bp Feature: domain Description: HTH_12 Location: 445455-445620 bp Feature: domain Description: HTH_12 Location: 445455-44562 0 bp Feature: gene Location: 445862-446827 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 446096-446639 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 446096-446639 bp Feature: gene Location: 446972-448795 bp Feature: gene Location: 448837-451005 bp Feature: domain Description: DUF262 Location: 448885-449566 bp Feature: domain Description: DUF2 62 Location: 448885-449566 bp Feature: domain Description: DUF1524 Location: 450175-450625 bp Feature: domain Description: DUF152 4 Location: 450175-45062 5 bp Feature: domain Description: RAMA Location: 450679-450967 bp Feature: domain Description: RAMA Location: 450679-450967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_12 (pfam08461), RVT-Retrons, DUF262 (pfam03235), DUF1524 (pfam07510), RAMA (pfam18755)

Seq: JACHXU010000003.1 Rhodopirellula rubra strain CECT 8075 Ga0372409_03, whole genome shotgun sequence (464776 bp)
Overview 1 RT 1: 382995-386508 bp Neighborhood of RT #1 [382995, 386508] Resolvase Recombinase RVT-Retrons HTH_XRE Feature: gene Location: 382995-384500 bp Feature: domain Description: Resolvase Location: 383073-383526 bp Feature: domain Description: Resolvase Location: 3 83 073 -3 83 526 bp Feature: domain Description: Recombinase Location: 383661-383976 bp Feature: domain Description: Recombinase Location: 3 83 661-3 83 976 bp Feature: gene Location: 384597-384818 bp Feature: gene Location: 384836-385891 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 384980-385508 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 84980-3 85508 bp Feature: gene Location: 385827-386165 bp Feature: domain Description: HTH_XRE Location: 385842-386013 bp Feature: domain Description: HTH_XRE Location: 3 85842-3 86013 bp Feature: gene Location: 386200-386508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), RVT-Retrons, HTH_XRE (smart00530)

Seq: JACHXU010000006.1 Rhodopirellula rubra strain CECT 8075 Ga0372409_06, whole genome shotgun sequence (404121 bp)
Overview 1 RT 1: 168849-173422 bp Neighborhood of RT #1 [168849, 173649] PRK08320 CMD RVT-Retrons PRK12361 ADP_ribosyl_GH Feature: gene Location: 168849-169712 bp Feature: domain Description: PRK08320 Location: 168858-169704 bp Feature: domain Description: PRK08320 Location: 168858-169704 bp Feature: gene Location: 169783-170100 bp Feature: domain Description: CMD Location: 169825-170074 bp Feature: domain Description: CMD Location: 169825-170074 bp Feature: gene Location: 170445-171839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 170901-171567 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 170901-171567 bp Feature: gene Location: 171836-172498 bp Feature: domain Description: PRK12361 Location: 171875-172490 bp Feature: domain Description: PRK12361 Location: 171875-1724 90 bp Feature: gene Location: 172495-173649 bp Feature: domain Description: ADP_ribosyl_GH Location: 172516-173422 bp Feature: domain Description: ADP_ribosyl_GH Location: 172516-1734 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08320 (branched-chain amino acid aminotransferase; Reviewed), CMD (pfam02627), RVT-Retrons, PRK12361 (hypothetical protein; Provisional), ADP_ribosyl_GH (pfam03747)

Seq: JACHXU010000017.1 Rhodopirellula rubra strain CECT 8075 Ga0372409_17, whole genome shotgun sequence (185148 bp)
Overview 1 RT 1: 6413-9808 bp Neighborhood of RT #1 [6413, 9813] RVT-GII GIIM DUF1905 OmdA PRK10089 Feature: gene Location: 6413-6730 bp Feature: gene Location: 6794-7198 bp Feature: gene Location: 7270-8649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7675-8293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7675 -8293 bp Feature: domain Description: GIIM Note: maturase Location: 8335-8563 bp Feature: domain Description: GIIM Note: maturase Location: 8335 -85 63 bp Feature: gene Location: 8662-8907 bp Feature: gene Location: 9022-9813 bp Feature: domain Description: DUF1905 Location: 9070-9262 bp Feature: domain Description: DUF1905 Location: 9070-9262 bp Feature: domain Description: OmdA Location: 9289-9454 bp Feature: domain Description: OmdA Location: 9289-945 4 bp Feature: domain Description: PRK10089 Location: 9484-9808 bp Feature: domain Description: PRK10089 Location: 9484-9808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF1905 (pfam08922), OmdA (pfam13376), PRK10089 (chaperone CsaA)

Seq: JACHXU010000050.1 Rhodopirellula rubra strain CECT 8075 Ga0372409_50, whole genome shotgun sequence (7284 bp)
Overview 1 RT 1: 1-2167 bp Neighborhood of RT #1 [1, 2167] RVT-GII GIIM Feature: gene Location: 1-972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-490 bp Feature: domain Description: GIIM Note: maturase Location: 541-745 bp Feature: domain Description: GIIM Note: maturase Location: 541-745 bp Feature: gene Location: 1027-1476 bp Feature: gene Location: 1580-2167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)