myRT

myRT report for GCA_014192855.1_ASM1419285v1

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Seq: JACHYP010000001.1 Paraburkholderia sp. WP4_3_2 Ga0348323_01, whole genome shotgun sequence (659326 bp)
Overview 1 RT 1: 8640-15044 bp Neighborhood of RT #1 [8640, 15067] ubiB TPMT RVT_N RVT-GII GIIM HNH COG2331 COG2928 Feature: gene Location: 8640-10220 bp Feature: domain Description: ubiB Location: 8643-10197 bp Feature: domain Description: ubiB Location: 8643-1 01 97 bp Feature: gene Location: 10260-10934 bp Feature: domain Description: TPMT Location: 10368-10848 bp Feature: domain Description: TPMT Location: 1 0368-1 0848 bp Feature: gene Location: 12155-13855 bp Feature: RT Description: RVT_N Location: 12212-12455 bp Feature: RT Description: RVT_N Location: 1 221 2-1 2455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12500-13148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2500-1 31 48 bp Feature: domain Description: GIIM Note: maturase Location: 13199-13433 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 99-1 3433 bp Feature: domain Description: HNH Note: nucleases Location: 13685-13820 bp Feature: domain Description: HNH Note: nucleases Location: 1 3685-1 3820 bp Feature: gene Location: 14013-14357 bp Feature: domain Description: COG2331 Location: 14016-14232 bp Feature: domain Description: COG2331 Location: 1 401 6-1 4232 bp Feature: gene Location: 14438-15067 bp Feature: domain Description: COG2928 Location: 14456-15044 bp Feature: domain Description: COG2928 Location: 1 4456-1 5044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPMT (pfam05724), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG2331 (Predicted nucleic acid-binding protein, contains Zn-ribbon domain ), COG2928 (Uncharacterized membrane protein ), ubiB (PRK04750)

Seq: JACHYP010000004.1 Paraburkholderia sp. WP4_3_2 Ga0348323_04, whole genome shotgun sequence (383580 bp)
Overview 1 RT 1: 103042-106731 bp Neighborhood of RT #1 [103042, 106731] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 103042-103506 bp Feature: domain Description: DUF1566 Location: 103354-103483 bp Feature: domain Description: DUF1566 Location: 103354-103483 bp Feature: gene Location: 103521-103895 bp Feature: domain Description: Avd_like Location: 103548-103851 bp Feature: domain Description: Avd_like Location: 103548-103851 bp Feature: gene Location: 103942-105246 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 104314-105001 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 104314-105001 bp Feature: gene Location: 105243-106214 bp Feature: gene Location: 106222-106731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: JACHYP010000015.1 Paraburkholderia sp. WP4_3_2 Ga0348323_15, whole genome shotgun sequence (203077 bp)
Overview 1 RT 1: 187735-192190 bp Neighborhood of RT #1 [187735, 192192] DUF3597 RVT-Retrons MAPEG PRK06498 Feature: gene Location: 187735-188148 bp Feature: domain Description: DUF3597 Location: 187744-188131 bp Feature: domain Description: DUF3 597 Location: 187744-18813 1 bp Feature: gene Location: 188161-188448 bp Feature: gene Location: 188547-189851 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 188967-189603 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 188967-189603 bp Feature: gene Location: 189908-190561 bp Feature: domain Description: MAPEG Location: 190103-190427 bp Feature: domain Description: MAPEG Location: 190103 -190427 bp Feature: gene Location: 190612-192192 bp Feature: domain Description: PRK06498 Location: 190615-192190 bp Feature: domain Description: PRK06498 Location: 190615-192190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3597 (pfam12200), RVT-Retrons, MAPEG (pfam01124), PRK06498 (isocitrate lyase; Provisional)

Seq: JACHYP010000065.1 Paraburkholderia sp. WP4_3_2 Ga0348323_65, whole genome shotgun sequence (3687 bp)
Overview 1 RT 1: 1477-3204 bp Neighborhood of RT #1 [1477, 3596] DUF772 RVT-GII Feature: gene Location: 1477-1767 bp Feature: domain Description: DUF772 Location: 1633-1744 bp Feature: domain Description: DUF772 Location: 1633-174 4 bp Feature: gene Location: 1771-2106 bp Feature: gene Location: 2310-3596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2514-3204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2514 -3204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII