myRT

myRT report for GCA_014196915.1_ASM1419691v1

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Seq: JACIEP010000005.1 Dysgonomonas hofstadii strain DSM 104969 Ga0373276_05, whole genome shotgun sequence (378532 bp)
Overview 1 RT 1: 146790-154557 bp Neighborhood of RT #1 [146790, 154562] 2A0602 outer_NodT RVT-Retrons DUF2975 YozG Feature: gene Location: 146790-149942 bp Feature: domain Description: 2A0602 Location: 146793-149883 bp Feature: domain Description: 2A0602 Location: 1 46793-1 49883 bp Feature: gene Location: 150058-151452 bp Feature: domain Description: outer_NodT Location: 150100-151444 bp Feature: domain Description: outer_NodT Location: 1 501 00-1 51 444 bp Feature: gene Location: 151739-152911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152108-152654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 521 08-1 52654 bp Feature: gene Location: 153679-154338 bp Feature: domain Description: DUF2975 Location: 153949-154336 bp Feature: domain Description: DUF2975 Location: 1 53949-1 54336 bp Feature: gene Location: 154353-154562 bp Feature: domain Description: YozG Location: 154356-154557 bp Feature: domain Description: YozG Location: 1 54356-1 54557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0602 (TIGR00915), outer_NodT (TIGR01845), RVT-Retrons, DUF2975 (pfam11188), YozG (COG3655)

Seq: JACIEP010000022.1 Dysgonomonas hofstadii strain DSM 104969 Ga0373276_22, whole genome shotgun sequence (61090 bp)
Overview 1 RT 1: 41119-50155 bp Neighborhood of RT #1 [41119, 50163] HTH_17 RVT_N RVT-GII GIIM N6_Mtase COG4646 DUF1896 Feature: gene Location: 41119-41439 bp Feature: domain Description: HTH_17 Location: 41251-41395 bp Feature: domain Description: HTH_17 Location: 412 51-41395 bp Feature: gene Location: 41483-42745 bp Feature: gene Location: 42751-44424 bp Feature: RT Description: RVT_N Location: 42823-43066 bp Feature: RT Description: RVT_N Location: 42 82 3-43066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43111-43759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43111-43759 bp Feature: domain Description: GIIM Note: maturase Location: 43813-44044 bp Feature: domain Description: GIIM Note: maturase Location: 43813-44044 bp Feature: gene Location: 45042-49730 bp Feature: domain Description: N6_Mtase Location: 45354-46035 bp Feature: domain Description: N6_Mtase Location: 45354-46035 bp Feature: domain Description: COG4646 Location: 47175-49347 bp Feature: domain Description: COG4646 Location: 47175-49347 bp Feature: gene Location: 49720-50163 bp Feature: domain Description: DUF1896 Location: 49750-50155 bp Feature: domain Description: DUF1896 Location: 49750-50155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), DUF1896 (pfam08989)

Seq: JACIEP010000029.1 Dysgonomonas hofstadii strain DSM 104969 Ga0373276_29, whole genome shotgun sequence (16370 bp)
Overview 1 RT 1: 3110-8321 bp Neighborhood of RT #1 [3110, 8332] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 3110-5143 bp Feature: domain Description: Bac_Flav_CT_G Location: 3113-5138 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 113 -513 8 bp Feature: gene Location: 5335-5541 bp Feature: gene Location: 5768-7450 bp Feature: RT Description: RVT_N Location: 5822-6065 bp Feature: RT Description: RVT_N Location: 5822-6065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6110-6758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6110-6758 bp Feature: domain Description: GIIM Note: maturase Location: 6812-7046 bp Feature: domain Description: GIIM Note: maturase Location: 6812-7046 bp Feature: gene Location: 7428-8015 bp Feature: domain Description: Bac_Flav_CT_G Location: 7545-8004 bp Feature: domain Description: Bac_Flav_CT_G Location: 7545-8004 bp Feature: gene Location: 8018-8332 bp Feature: domain Description: DUF3876 Location: 8060-8321 bp Feature: domain Description: DUF3 876 Location: 8060-83 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)