myRT

myRT report for GCA_014196955.1_ASM1419695v1

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Seq: JACIER010000003.1 Bacteroides reticulotermitis strain DSM 105720 Ga0373282_03, whole genome shotgun sequence (403143 bp)
Overview 1 RT 1: 339992-344542 bp Neighborhood of RT #1 [339992, 344550] NlpD dnaG RVT-GII Intron_maturas2 Toprim_2 dam Feature: gene Location: 339992-340444 bp Feature: domain Description: NlpD Location: 340022-340406 bp Feature: domain Description: NlpD Location: 340022-340406 bp Feature: gene Location: 340461-340619 bp Feature: domain Description: dnaG Location: 340533-340611 bp Feature: domain Description: dnaG Location: 340533-34061 1 bp Feature: gene Location: 341191-342999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341455-342277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 455-342277 bp Feature: domain Description: Intron_maturas2 Location: 342346-342655 bp Feature: domain Description: Intron_maturas2 Location: 342346-342655 bp Feature: gene Location: 342971-343873 bp Feature: domain Description: Toprim_2 Location: 343514-343784 bp Feature: domain Description: Toprim_2 Location: 34351 4-343784 bp Feature: gene Location: 344149-344550 bp Feature: domain Description: dam Location: 344155-344542 bp Feature: domain Description: dam Location: 3441 55-344542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), dnaG (TIGR01391), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), dam (TIGR00571)

Seq: JACIER010000004.1 Bacteroides reticulotermitis strain DSM 105720 Ga0373282_04, whole genome shotgun sequence (387054 bp)
Overview 1 RT 1: 21709-26919 bp Neighborhood of RT #1 [21709, 26919] RVT-DGRs DUF3575 Feature: gene Location: 21709-21900 bp Feature: gene Location: 22084-22275 bp Feature: gene Location: 22314-23615 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22545-23271 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 2 545-2 32 71 bp Feature: gene Location: 23907-24485 bp Feature: domain Description: DUF3575 Location: 23964-24483 bp Feature: domain Description: DUF3575 Location: 2 3964-2 4483 bp Feature: gene Location: 24496-26919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3575 (pfam12099)

Seq: JACIER010000005.1 Bacteroides reticulotermitis strain DSM 105720 Ga0373282_05, whole genome shotgun sequence (289584 bp)
Overview 1 RT 1: 206848-210235 bp Neighborhood of RT #1 [206848, 210258] DUF4494 NUMOD4 HNH_3 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 206848-207306 bp Feature: domain Description: DUF4494 Location: 206860-207274 bp Feature: domain Description: DUF4494 Location: 206860-207274 bp Feature: gene Location: 207303-207872 bp Feature: domain Description: NUMOD4 Location: 207312-207492 bp Feature: domain Description: NUMOD4 Location: 2073 12-207492 bp Feature: domain Description: HNH_3 Location: 207525-207651 bp Feature: domain Description: HNH_3 Location: 207525-207651 bp Feature: gene Location: 207890-209188 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 208199-208889 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 208199-208889 bp Feature: gene Location: 209288-209632 bp Feature: domain Description: Avd_like Location: 209312-209627 bp Feature: domain Description: Avd_like Location: 2093 12-209627 bp Feature: gene Location: 209662-210258 bp Feature: domain Description: DUF1566 Location: 209869-210235 bp Feature: domain Description: DUF1566 Location: 209869-21023 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4494 (pfam14902), NUMOD4 (pfam07463), HNH_3 (pfam13392), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: JACIER010000014.1 Bacteroides reticulotermitis strain DSM 105720 Ga0373282_14, whole genome shotgun sequence (140608 bp)
Overview 1 RT 1: 135097-139806 bp Neighborhood of RT #1 [135097, 139820] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 135097-135270 bp Feature: domain Description: Bac_Flav_CT_G Location: 135100-135256 bp Feature: domain Description: Bac_Flav_CT_G Location: 135100-135256 bp Feature: gene Location: 135277-135555 bp Feature: domain Description: Bac_Flav_CT_G Location: 135295-135553 bp Feature: domain Description: Bac_Flav_CT_G Location: 135295-135553 bp Feature: gene Location: 135633-137444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135897-136719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135897-136719 bp Feature: domain Description: Intron_maturas2 Location: 136794-137109 bp Feature: domain Description: Intron_maturas2 Location: 136794 -137109 bp Feature: domain Description: HNHc Note: nucleases Location: 137265-137415 bp Feature: domain Description: HNHc Note: nucleases Location: 137265-1374 15 bp Feature: gene Location: 137790-137963 bp Feature: gene Location: 137991-139820 bp Feature: domain Description: Bac_Flav_CT_G Location: 137994-139806 bp Feature: domain Description: Bac_Flav_CT_G Location: 137994 -139806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JACIER010000049.1 Bacteroides reticulotermitis strain DSM 105720 Ga0373282_49, whole genome shotgun sequence (2432 bp)
Overview 1 RT 1: 226-1930 bp Neighborhood of RT #1 [226, 2316] RVT_N RVT-GII GIIM Feature: gene Location: 226-450 bp Feature: gene Location: 463-606 bp Feature: gene Location: 652-2316 bp Feature: RT Description: RVT_N Location: 706-946 bp Feature: RT Description: RVT_N Location: 706-946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994-1642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994-1642 bp Feature: domain Description: GIIM Note: maturase Location: 1699-1930 bp Feature: domain Description: GIIM Note: maturase Location: 1699-1930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)