myRT

myRT report for GCA_014197405.1_ASM1419740v1

Download annotations/find similar RTs

Seq: JACIFL010000009.1 Rhizobium sp. BK109 Ga0365252_09, whole genome shotgun sequence (338813 bp)
Overview 1 RT 1: 20559-27793 bp Neighborhood of RT #1 [20559, 27840] APH APH RVT-UG2 MPP_MS158 FtsH_fam Feature: gene Location: 20559-21344 bp Feature: domain Description: APH Location: 20667-20871 bp Feature: domain Description: APH Location: 20667-20871 bp Feature: domain Description: APH Location: 20883-21042 bp Feature: domain Description: APH Location: 20883-21 042 bp Feature: gene Location: 21430-22389 bp Feature: gene Location: 22963-24402 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 23143-24055 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 231 43-24055 bp Feature: gene Location: 24827-25639 bp Feature: domain Description: MPP_MS158 Location: 24842-25586 bp Feature: domain Description: MPP_MS1 58 Location: 24842-25586 bp Feature: gene Location: 25852-27840 bp Feature: domain Description: FtsH_fam Location: 26602-27793 bp Feature: domain Description: FtsH_fam Location: 26602-27793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT APH (pfam01636), RVT-UG2, MPP_MS158 (cd07404), FtsH_fam (TIGR01241)

Seq: JACIFL010000022.1 Rhizobium sp. BK109 Ga0365252_22, whole genome shotgun sequence (72539 bp)
Overview 1 RT 1: 5656-11876 bp Neighborhood of RT #1 [5656, 11876] INT_C_like_1 RVT-Retrons COG3183 Feature: gene Location: 5656-5823 bp Feature: gene Location: 5858-7225 bp Feature: domain Description: INT_C_like_1 Location: 6656-7166 bp Feature: domain Description: INT_C_like_1 Location: 6656-7166 bp Feature: gene Location: 7291-9030 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7429-8059 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 742 9-8059 bp Feature: gene Location: 9242-10312 bp Feature: domain Description: COG3183 Location: 9989-10289 bp Feature: domain Description: COG3183 Location: 9989-102 89 bp Feature: gene Location: 10608-11876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_C_like_1 (cd01184), RVT-Retrons, COG3183 (Predicted restriction endonuclease, HNH family )

Seq: JACIFL010000026.1 Rhizobium sp. BK109 Ga0365252_26, whole genome shotgun sequence (35417 bp)
Overview 1 RT 1: 1-1925 bp Neighborhood of RT #1 [1, 1925] RVT-GII GIIM Feature: gene Location: 1-168 bp Feature: gene Location: 222-827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228-438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228-43 8 bp Feature: domain Description: GIIM Note: maturase Location: 519-735 bp Feature: domain Description: GIIM Note: maturase Location: 519-73 5 bp Feature: gene Location: 864-1106 bp Feature: gene Location: 1116-1925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)