myRT

myRT report for GCA_014197585.1_ASM1419758v1

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Seq: JACIFW010000022.1 Rhizobium tropici strain SEMIA 4079 Ga0394387_22, whole genome shotgun sequence (86491 bp)
Overview 1 RT 1: 28425-31552 bp Neighborhood of RT #1 [28425, 31552] COG5489 RVT_N RVT-GII GIIM Feature: gene Location: 28425-28901 bp Feature: gene Location: 29042-29350 bp Feature: domain Description: COG5489 Location: 29045-29348 bp Feature: domain Description: COG5489 Location: 29045-29348 bp Feature: gene Location: 29636-31156 bp Feature: domain Description: RVT_N Location: 29687-29915 bp Feature: domain Description: RVT_N Location: 29687-2991 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29975-30614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29975-3061 4 bp Feature: domain Description: GIIM Note: maturase Location: 30671-30899 bp Feature: domain Description: GIIM Note: maturase Location: 30671 -30899 bp Feature: gene Location: 31240-31386 bp Feature: gene Location: 31412-31552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5489 (Uncharacterized conserved protein, DUF736 family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JACIFW010000033.1 Rhizobium tropici strain SEMIA 4079 Ga0394387_33, whole genome shotgun sequence (32481 bp)
Overview 1 RT 1: 20440-25303 bp Neighborhood of RT #1 [20440, 25303] DUF4263 SLATT_5 RVT-UG17 HTH_29 rve Feature: gene Location: 20440-20727 bp Feature: domain Description: DUF4263 Location: 20446-20692 bp Feature: domain Description: DUF42 63 Location: 2 0446-2 0692 bp Feature: gene Location: 21020-21598 bp Feature: domain Description: SLATT_5 Location: 21047-21581 bp Feature: domain Description: SLATT_5 Location: 2 1047-2 1581 bp Feature: gene Location: 21604-22920 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 21832-22414 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 1832 -2 2 414 bp Feature: gene Location: 23138-24559 bp Feature: domain Description: HTH_29 Location: 23180-23363 bp Feature: domain Description: HTH_2 9 Location: 2 3180-2 3363 bp Feature: domain Description: rve Location: 23564-23930 bp Feature: domain Description: rve Location: 2 3564-2 3930 bp Feature: gene Location: 24566-25303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4263 (pfam14082), SLATT_5 (pfam18160), RVT-UG17, HTH_29 (pfam13551), rve (pfam00665)

Seq: JACIFW010000048.1 Rhizobium tropici strain SEMIA 4079 Ga0394387_48, whole genome shotgun sequence (9967 bp)
Overview 1 RT 1: 4937-8950 bp Neighborhood of RT #1 [4937, 9015] RVT-GII GIIM AccC Feature: gene Location: 4937-5227 bp Feature: gene Location: 5466-5741 bp Feature: gene Location: 5958-7208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6174-6819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6174-6819 bp Feature: domain Description: GIIM Note: maturase Location: 6906-7116 bp Feature: domain Description: GIIM Note: maturase Location: 6906-7116 bp Feature: gene Location: 7260-7493 bp Feature: gene Location: 7726-9015 bp Feature: domain Description: AccC Location: 7744-8950 bp Feature: domain Description: AccC Location: 7744-8950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AccC (COG0439)

Seq: JACIFW010000075.1 Rhizobium tropici strain SEMIA 4079 Ga0394387_75, whole genome shotgun sequence (1539 bp)
Overview 1 RT 1: 10-1536 bp Neighborhood of RT #1 [10, 1536] RVT-GII GIIM Feature: gene Location: 10-1332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-955 bp Feature: domain Description: GIIM Note: maturase Location: 1024-1237 bp Feature: domain Description: GIIM Note: maturase Location: 1024 -1237 bp Feature: gene Location: 1351-1536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)