myRT

myRT report for GCA_014197735.1_ASM1419773v1

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Seq: JACIGC010000016.1 Rhodoblastus sphagnicola strain DSM 16996 Ga0394276_016, whole genome shotgun sequence (99033 bp)
Overview 1 RT 1: 75361-81459 bp Neighborhood of RT #1 [75361, 81470] YfmG YfmG HRDC RVT-DGRs YfmG YfmG Feature: gene Location: 75361-78594 bp Feature: domain Description: YfmG Location: 76897-77605 bp Feature: domain Description: YfmG Location: 76897-77605 bp Feature: domain Description: YfmG Location: 77887-78583 bp Feature: domain Description: YfmG Location: 77887-78583 bp Feature: gene Location: 78749-79246 bp Feature: domain Description: HRDC Location: 78995-79193 bp Feature: domain Description: HRDC Location: 78995-791 93 bp Feature: gene Location: 79236-80255 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 79446-80037 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 79446-80037 bp Feature: gene Location: 80300-80551 bp Feature: domain Description: YfmG Location: 80303-80411 bp Feature: domain Description: YfmG Location: 80303-8041 1 bp Feature: gene Location: 80568-81470 bp Feature: domain Description: YfmG Location: 80715-81459 bp Feature: domain Description: YfmG Location: 8071 5-81 459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), HRDC (smart00341), RVT-DGRs

Seq: JACIGC010000045.1 Rhodoblastus sphagnicola strain DSM 16996 Ga0394276_045, whole genome shotgun sequence (15048 bp)
Overview 1 RT 1: 106-5615 bp Neighborhood of RT #1 [106, 5653] RVT-GII GIIM 2A0601 8a0102 Feature: gene Location: 106-900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-472 bp Feature: domain Description: GIIM Note: maturase Location: 520-748 bp Feature: domain Description: GIIM Note: maturase Location: 52 0-748 bp Feature: gene Location: 1210-4467 bp Feature: domain Description: 2A0601 Location: 1213-4399 bp Feature: domain Description: 2 A0601 Location: 12 13-4399 bp Feature: gene Location: 4475-5653 bp Feature: domain Description: 8a0102 Location: 4775-5615 bp Feature: domain Description: 8a0102 Location: 4775-5615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), 2A0601 (TIGR00914), 8a0102 (TIGR00999)

Seq: JACIGC010000046.1 Rhodoblastus sphagnicola strain DSM 16996 Ga0394276_046, whole genome shotgun sequence (14502 bp)
Overview 1 RT 1: 1641-4637 bp 2 RT 2: 7912-11585 bp Neighborhood of RT #1 [1641, 4639] Phage_int_SAM_1 group_II_RT_mat RVT-GII BDS1 Neighborhood of RT #2 [7912, 11707] PHA02517 RVT-GII KOG4768 PHA02517 InsE Feature: gene Location: 1641-2738 bp Feature: domain Description: Phage_int_SAM_1 Location: 2403-2571 bp Feature: domain Description: Phage_int_SAM_1 Location: 2403 -2571 bp Feature: gene Location: 2445-2837 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2493-2667 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2493 -2667 bp Feature: gene Location: 3012-3296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3039-3273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 03 9-3 273 bp Feature: gene Location: 3413-3853 bp Feature: gene Location: 3971-4639 bp Feature: domain Description: BDS1 Location: 3974-4637 bp Feature: domain Description: BDS1 Location: 3 974-463 7 bp Feature: gene Location: 7912-8112 bp Feature: gene Location: 8158-8694 bp Feature: domain Description: PHA02517 Location: 8167-8530 bp Feature: domain Description: PHA02517 Location: 8167-853 0 bp Feature: gene Location: 8788-10476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9262-10021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9262-10021 bp Feature: domain Description: KOG4768 Location: 10159-10321 bp Feature: domain Description: KOG4768 Location: 10159-103 21 bp Feature: gene Location: 10892-11287 bp Feature: domain Description: PHA02517 Location: 10994-11255 bp Feature: domain Description: PHA02517 Location: 10994-11255 bp Feature: gene Location: 11336-11707 bp Feature: domain Description: InsE Location: 11453-11585 bp Feature: domain Description: InsE Location: 11453 -11585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), group_II_RT_mat (TIGR04416), RVT-GII, BDS1 (COG2015), PHA02517 (putative transposase OrfB; Reviewed), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), InsE (COG2963)

Seq: JACIGC010000057.1 Rhodoblastus sphagnicola strain DSM 16996 Ga0394276_057, whole genome shotgun sequence (6335 bp)
Overview 1 RT 1: 54-3956 bp Neighborhood of RT #1 [54, 3956] DUF772 DDE_Tnp_1 RVT-GII Feature: gene Location: 54-1319 bp Feature: domain Description: DUF772 Location: 228-444 bp Feature: domain Description: DUF772 Location: 228-4 4 4 bp Feature: domain Description: DDE_Tnp_1 Location: 720-1128 bp Feature: domain Description: DDE_Tnp_1 Location: 720-1128 bp Feature: gene Location: 1357-2226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1645-2206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164 5-2206 bp Feature: gene Location: 2357-2722 bp Feature: gene Location: 2733-3956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), RVT-GII

Seq: JACIGC010000096.1 Rhodoblastus sphagnicola strain DSM 16996 Ga0394276_096, whole genome shotgun sequence (1261 bp)
Overview 1 RT 1: 3-1106 bp Neighborhood of RT #1 [3, 1258] ScpB RVT-GII GIIM Feature: gene Location: 3-260 bp Feature: domain Description: ScpB Location: 9-228 bp Feature: domain Description: ScpB Location: 9-228 bp Feature: gene Location: 362-1258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365 -830 bp Feature: domain Description: GIIM Note: maturase Location: 878-1106 bp Feature: domain Description: GIIM Note: maturase Location: 878-1106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ScpB (COG1386), RVT-GII, GIIM (pfam08388)

Seq: JACIGC010000101.1 Rhodoblastus sphagnicola strain DSM 16996 Ga0394276_101, whole genome shotgun sequence (1062 bp)
Overview 1 RT 1: 476-1061 bp Neighborhood of RT #1 [476, 1060] RVT-GII Feature: gene Location: 476-1060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821-106 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII