myRT

myRT report for GCA_014198205.1_ASM1419820v1

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Seq: JACIHC010000005.1 Bradyrhizobium sp. SBR1B Ga0394404_05, whole genome shotgun sequence (582956 bp)
Overview 1 RT 1: 70958-77150 bp Neighborhood of RT #1 [70958, 77150] RVT-Retrons RecN DUF3732 Feature: gene Location: 70958-71098 bp Feature: gene Location: 71420-73171 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71555-72194 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71 555-721 94 bp Feature: gene Location: 73527-75485 bp Feature: domain Description: RecN Location: 73593-73683 bp Feature: domain Description: RecN Location: 73593-73683 bp Feature: domain Description: DUF3732 Location: 74913-75453 bp Feature: domain Description: DUF3732 Location: 7491 3-75453 bp Feature: gene Location: 75981-77150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, RecN (COG0497), DUF3732 (pfam12532)

Seq: JACIHC010000028.1 Bradyrhizobium sp. SBR1B Ga0394404_28, whole genome shotgun sequence (47668 bp)
Overview 1 RT 1: 14342-21095 bp Neighborhood of RT #1 [14342, 21199] LasI Autoind_bind LuxR_C_like RVT-GII Intron_maturas2 DUF3991 Toprim_2 DUF1419 Feature: gene Location: 14342-14977 bp Feature: domain Description: LasI Location: 14378-14966 bp Feature: domain Description: LasI Location: 14378-14966 bp Feature: gene Location: 15394-16125 bp Feature: domain Description: Autoind_bind Location: 15457-15880 bp Feature: domain Description: Autoind_bind Location: 15457-15880 bp Feature: domain Description: LuxR_C_like Location: 15940-16108 bp Feature: domain Description: LuxR_C_like Location: 15940-16108 bp Feature: gene Location: 16482-18254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16662-17493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16662 -17493 bp Feature: domain Description: Intron_maturas2 Location: 17628-17874 bp Feature: domain Description: Intron_maturas2 Location: 1762 8-17874 bp Feature: gene Location: 19354-20439 bp Feature: domain Description: DUF3991 Location: 19936-20137 bp Feature: domain Description: DUF3991 Location: 19936-2 0137 bp Feature: domain Description: Toprim_2 Location: 20158-20431 bp Feature: domain Description: Toprim_2 Location: 2 0158-2 0431 bp Feature: gene Location: 20759-21199 bp Feature: domain Description: DUF1419 Location: 20762-21095 bp Feature: domain Description: DUF1419 Location: 2 0762 -2 1095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LasI (COG3916), Autoind_bind (pfam03472), LuxR_C_like (cd06170), RVT-GII, Intron_maturas2 (pfam01348), DUF3991 (pfam13154), Toprim_2 (pfam13155), DUF1419 (pfam07215)

Seq: JACIHC010000038.1 Bradyrhizobium sp. SBR1B Ga0394404_38, whole genome shotgun sequence (22602 bp)
Overview 1 RT 1: 20745-22525 bp Neighborhood of RT #1 [20745, 22545] GIIM RVT-GII Feature: gene Location: 20745-20918 bp Feature: gene Location: 21015-21503 bp Feature: domain Description: GIIM Note: maturase Location: 21054-21282 bp Feature: domain Description: GIIM Note: maturase Location: 21054-21282 bp Feature: gene Location: 21559-22545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21832-22525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2183 2-22525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII

Seq: JACIHC010000039.1 Bradyrhizobium sp. SBR1B Ga0394404_39, whole genome shotgun sequence (21832 bp)
Overview 1 RT 1: 17378-21317 bp Neighborhood of RT #1 [17378, 21709] COG5659 COG5659 RVT-GII Feature: gene Location: 17378-18871 bp Feature: gene Location: 19357-20505 bp Feature: domain Description: COG5659 Location: 19444-19654 bp Feature: domain Description: COG5659 Location: 194 4 4 -19654 bp Feature: domain Description: COG5659 Location: 19978-20452 bp Feature: domain Description: COG5659 Location: 19978-204 52 bp Feature: gene Location: 20669-21709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20672-21317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20672-21317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5659 (SRSO17 transposase ), RVT-GII

Seq: JACIHC010000041.1 Bradyrhizobium sp. SBR1B Ga0394404_41, whole genome shotgun sequence (21127 bp)
Overview 1 RT 1: 80-1510 bp Neighborhood of RT #1 [80, 1659] RVT-GII HTH_21 Feature: gene Location: 80-655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 3-641 bp Feature: gene Location: 768-1016 bp Feature: gene Location: 1240-1659 bp Feature: domain Description: HTH_21 Location: 1348-1510 bp Feature: domain Description: HTH_21 Location: 1348-15 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), RVT-GII

Seq: JACIHC010000057.1 Bradyrhizobium sp. SBR1B Ga0394404_57, whole genome shotgun sequence (5643 bp)
Overview 1 RT 1: 1212-5467 bp Neighborhood of RT #1 [1212, 5565] TnpB_IS66 COG3436 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C rve_3 Feature: gene Location: 1212-1469 bp Feature: domain Description: TnpB_IS66 Location: 1221-1431 bp Feature: domain Description: TnpB_IS6 6 Location: 1221-1431 bp Feature: gene Location: 1539-2525 bp Feature: domain Description: COG3436 Location: 1845-2313 bp Feature: domain Description: COG3436 Location: 1845-2313 bp Feature: gene Location: 2957-4369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3248-3911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3248-3911 bp Feature: domain Description: GIIM Note: maturase Location: 3977-4205 bp Feature: domain Description: GIIM Note: maturase Location: 3977-4205 bp Feature: gene Location: 4704-5129 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4881-4962 bp Feature: domain Description: DDE_Tnp_IS6 6 Location: 4881-496 2 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4983-5097 bp Feature: domain Description: DDE_Tnp_IS6 6 _C Location: 4983-5097 bp Feature: gene Location: 5242-5565 bp Feature: domain Description: rve_3 Location: 5269-5467 bp Feature: domain Description: rve_3 Location: 526 9-546 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), COG3436 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), rve_3 (pfam13683)

Seq: JACIHC010000059.1 Bradyrhizobium sp. SBR1B Ga0394404_59, whole genome shotgun sequence (4544 bp)
Overview 1 RT 1: 2-2286 bp Neighborhood of RT #1 [2, 2324] RVT-GII group_II_RT_mat PHA02517 Phasin_2 Feature: gene Location: 2-466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59-389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59-389 bp Feature: gene Location: 481-1587 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 487-799 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 487 -7 99 bp Feature: domain Description: PHA02517 Location: 1141-1552 bp Feature: domain Description: PHA02517 Location: 1141-1552 bp Feature: gene Location: 1926-2324 bp Feature: domain Description: Phasin_2 Location: 2082-2286 bp Feature: domain Description: Phasin_2 Location: 2082-2286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phasin_2 (pfam09361), RVT-GII, group_II_RT_mat (TIGR04416), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JACIHC010000065.1 Bradyrhizobium sp. SBR1B Ga0394404_65, whole genome shotgun sequence (2725 bp)
Overview 1 RT 1: 299-2639 bp Neighborhood of RT #1 [299, 2647] DUF772 RVT-GII GIIM HTH_Tnp_1 HTH_21 Feature: gene Location: 299-532 bp Feature: gene Location: 996-1490 bp Feature: domain Description: DUF772 Location: 1155-1371 bp Feature: domain Description: DUF772 Location: 1155-1371 bp Feature: gene Location: 1512-2039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1515-1647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1515-1647 bp Feature: domain Description: GIIM Note: maturase Location: 1728-1962 bp Feature: domain Description: GIIM Note: maturase Location: 1728 -1962 bp Feature: gene Location: 2103-2405 bp Feature: domain Description: HTH_Tnp_1 Location: 2145-2352 bp Feature: domain Description: HTH_Tnp_1 Location: 2145-2352 bp Feature: gene Location: 2402-2647 bp Feature: domain Description: HTH_21 Location: 2528-2639 bp Feature: domain Description: HTH_21 Location: 2528 -2639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), DUF772 (pfam05598)