myRT

myRT report for GCA_014200185.1_ASM1420018v1

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Seq: JACHBH010000023.1 Rhizobium tropici strain SEMIA 4063 Ga0394382_23, whole genome shotgun sequence (86491 bp)
Overview 1 RT 1: 54558-58067 bp Neighborhood of RT #1 [54558, 58067] HU_IHF RVT_N RVT-GII GIIM COG5489 Feature: gene Location: 54558-54728 bp Feature: domain Description: HU_IHF Location: 54573-54726 bp Feature: domain Description: HU_IHF Location: 54573-54726 bp Feature: gene Location: 54940-55080 bp Feature: gene Location: 55336-56856 bp Feature: domain Description: RVT_N Location: 55387-55615 bp Feature: domain Description: RVT_N Location: 55387-5561 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55675-56314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55675-5631 4 bp Feature: domain Description: GIIM Note: maturase Location: 56371-56599 bp Feature: domain Description: GIIM Note: maturase Location: 56371 -56599 bp Feature: gene Location: 57142-57450 bp Feature: domain Description: COG5489 Location: 57145-57448 bp Feature: domain Description: COG5489 Location: 571 45-57448 bp Feature: gene Location: 57591-58067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HU_IHF (cl00257), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG5489 (Uncharacterized conserved protein, DUF736 family )

Seq: JACHBH010000031.1 Rhizobium tropici strain SEMIA 4063 Ga0394382_31, whole genome shotgun sequence (41280 bp)
Overview 1 RT 1: 7179-12007 bp Neighborhood of RT #1 [7179, 12042] HTH_29 rve RVT-UG17 SLATT_5 DUF4263 Feature: gene Location: 7179-7916 bp Feature: gene Location: 7923-9344 bp Feature: domain Description: HTH_29 Location: 7965-8148 bp Feature: domain Description: HTH_2 9 Location: 7965-8148 bp Feature: domain Description: rve Location: 8349-8715 bp Feature: domain Description: rve Location: 8349-8715 bp Feature: gene Location: 9562-10878 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 9790-10372 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 9790-10372 bp Feature: gene Location: 10884-11462 bp Feature: domain Description: SLATT_5 Location: 10911-11445 bp Feature: domain Description: SLATT_5 Location: 10911-11445 bp Feature: gene Location: 11755-12042 bp Feature: domain Description: DUF4263 Location: 11761-12007 bp Feature: domain Description: DUF42 63 Location: 11761-12 007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), rve (pfam00665), RVT-UG17, SLATT_5 (pfam18160), DUF4263 (pfam14082)

Seq: JACHBH010000043.1 Rhizobium tropici strain SEMIA 4063 Ga0394382_43, whole genome shotgun sequence (10759 bp)
Overview 1 RT 1: 5729-9742 bp Neighborhood of RT #1 [5729, 9807] RVT-GII GIIM AccC Feature: gene Location: 5729-6019 bp Feature: gene Location: 6258-6533 bp Feature: gene Location: 6750-8000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6966-7611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6966-7611 bp Feature: domain Description: GIIM Note: maturase Location: 7698-7908 bp Feature: domain Description: GIIM Note: maturase Location: 7698-7908 bp Feature: gene Location: 8052-8285 bp Feature: gene Location: 8518-9807 bp Feature: domain Description: AccC Location: 8536-9742 bp Feature: domain Description: AccC Location: 853 6-9742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AccC (COG0439)

Seq: JACHBH010000062.1 Rhizobium tropici strain SEMIA 4063 Ga0394382_62, whole genome shotgun sequence (1784 bp)
Overview 1 RT 1: 10-1777 bp Neighborhood of RT #1 [10, 1782] RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 10-1332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-955 bp Feature: domain Description: GIIM Note: maturase Location: 1024-1237 bp Feature: domain Description: GIIM Note: maturase Location: 1024 -1237 bp Feature: gene Location: 1351-1782 bp Feature: domain Description: DDE_Tnp_1 Location: 1447-1777 bp Feature: domain Description: DDE_Tnp_1 Location: 14 4 7-1777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)