myRT

myRT report for GCA_014200335.1_ASM1420033v1

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Seq: JACHBN010000001.1 Paraburkholderia bryophila strain H2C3D Ga0394400_01, whole genome shotgun sequence (4734765 bp)
Overview 1 RT 1: 1576901-1582959 bp 2 RT 2: 1933493-1945245 bp Neighborhood of RT #1 [1576901, 1583027] 2A0305 GlxA GyrI-like RVT-Retrons YdcF-like Neighborhood of RT #2 [1933493, 1945388] rpoB PRK00566 RVT-GII MASE1 PAS_3 YvaK Feature: gene Location: 1576901-1578304 bp Feature: domain Description: 2A0305 Location: 1576946-1578290 bp Feature: domain Description: 2A0305 Location: 1 576946-1 578290 bp Feature: gene Location: 1578561-1579427 bp Feature: domain Description: GlxA Location: 1578588-1578906 bp Feature: domain Description: GlxA Location: 1 578588-1 578906 bp Feature: domain Description: GyrI-like Location: 1578960-1579422 bp Feature: domain Description: GyrI-like Location: 1 578960-1 579422 bp Feature: gene Location: 1580012-1581385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1580477-1581116 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 580477-1 581 1 1 6 bp Feature: gene Location: 1581441-1582202 bp Feature: gene Location: 1582392-1583027 bp Feature: domain Description: YdcF-like Location: 1582566-1582959 bp Feature: domain Description: YdcF-like Location: 1 582566-1 582959 bp Feature: gene Location: 1933493-1937599 bp Feature: domain Description: rpoB Location: 1933517-1937585 bp Feature: domain Description: rpoB Location: 1 93351 7-1 937585 bp Feature: gene Location: 1937621-1941859 bp Feature: domain Description: PRK00566 Location: 1937660-1941785 bp Feature: domain Description: PRK00566 Location: 1 937660-1 941 785 bp Feature: gene Location: 1942323-1943054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942656-1942992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 942656-1 942992 bp Feature: gene Location: 1943193-1944491 bp Feature: domain Description: MASE1 Location: 1943241-1944078 bp Feature: domain Description: MASE1 Location: 1 943241 -1 944078 bp Feature: domain Description: PAS_3 Location: 1944195-1944462 bp Feature: domain Description: PAS_3 Location: 1 9441 95-1 944462 bp Feature: gene Location: 1944495-1945388 bp Feature: domain Description: YvaK Location: 1944513-1945245 bp Feature: domain Description: YvaK Location: 1 94451 3-1 945245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0305 (TIGR00908), GlxA (COG4977), GyrI-like (pfam06445), RVT-Retrons, YdcF-like (cl00630), rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-GII, MASE1 (pfam05231), PAS_3 (pfam08447)
YvaK (COG1647)

Seq: JACHBN010000002.1 Paraburkholderia bryophila strain H2C3D Ga0394400_02, whole genome shotgun sequence (3522296 bp)
Overview 1 RT 1: 1687115-1693935 bp Neighborhood of RT #1 [1687115, 1694111] BRR2 BRR2 DUF1837 RVT-G2L4 HNH_2 Feature: gene Location: 1687115-1690279 bp Feature: domain Description: BRR2 Location: 1687835-1688426 bp Feature: domain Description: BRR2 Location: 1687835-168842 6 bp Feature: domain Description: BRR2 Location: 1688864-1689113 bp Feature: domain Description: BRR2 Location: 1688864-1689113 bp Feature: gene Location: 1690269-1691075 bp Feature: domain Description: DUF1837 Location: 1690410-1690716 bp Feature: domain Description: DUF1837 Location: 1690410-1690716 bp Feature: gene Location: 1691280-1692584 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 1691502-1692075 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 1691502 -1692 075 bp Feature: gene Location: 1692674-1692835 bp Feature: gene Location: 1693245-1694111 bp Feature: domain Description: HNH_2 Location: 1693779-1693935 bp Feature: domain Description: HNH_2 Location: 1693779-1693935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BRR2 (COG1204), DUF1837 (pfam08878), RVT-G2L4, HNH_2 (pfam13391)