myRT

myRT report for GCA_014200875.1_ASM1420087v1

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Seq: JACHDC010000008.1 Paraburkholderia sp. HC6.4b Ga0400090_08, whole genome shotgun sequence (306744 bp)
Overview 1 RT 1: 298658-302227 bp Neighborhood of RT #1 [298658, 302227] CytC5 CytC5 AlpA RVT-UNC Feature: gene Location: 298658-299626 bp Feature: domain Description: CytC5 Location: 298922-299198 bp Feature: domain Description: CytC5 Location: 298922-2991 98 bp Feature: domain Description: CytC5 Location: 299276-299618 bp Feature: domain Description: CytC5 Location: 299276-29961 8 bp Feature: gene Location: 300166-300396 bp Feature: domain Description: AlpA Location: 300193-300355 bp Feature: domain Description: AlpA Location: 3001 93-300355 bp Feature: gene Location: 300393-301454 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 301041-301179 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 301 041 -301 1 79 bp Feature: gene Location: 301508-301852 bp Feature: gene Location: 302081-302227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CytC5 (COG3245), AlpA (COG3311), RVT-UG11/RVT-DGRs/RVT-CRISPR(RVT-UNC)

Seq: JACHDC010000011.1 Paraburkholderia sp. HC6.4b Ga0400090_11, whole genome shotgun sequence (262726 bp)
Overview 1 RT 1: 86318-88898 bp Neighborhood of RT #1 [86318, 88924] group_II_RT_mat RVT-GII Flavodoxin_2 DUF2867 Feature: gene Location: 86318-86488 bp Feature: gene Location: 86745-87020 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 86895-87012 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 86895-87012 bp Feature: gene Location: 87079-87303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87082-87286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87082 -872 86 bp Feature: gene Location: 87778-88413 bp Feature: domain Description: Flavodoxin_2 Location: 87793-88285 bp Feature: domain Description: Flavodoxin_2 Location: 87793-882 85 bp Feature: gene Location: 88457-88924 bp Feature: domain Description: DUF2867 Location: 88481-88898 bp Feature: domain Description: DUF2 867 Location: 88481-88898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, Flavodoxin_2 (pfam02525), DUF2867 (pfam11066)

Seq: JACHDC010000015.1 Paraburkholderia sp. HC6.4b Ga0400090_15, whole genome shotgun sequence (240677 bp)
Overview 1 RT 1: 163420-170663 bp Neighborhood of RT #1 [163420, 170668] SecD secF RVT-GII GIIM MFS_CitA YceI Feature: gene Location: 163420-165513 bp Feature: domain Description: SecD Location: 163663-165259 bp Feature: domain Description: SecD Location: 163 663 -165259 bp Feature: gene Location: 165532-166482 bp Feature: domain Description: secF Location: 165556-166420 bp Feature: domain Description: secF Location: 165556-166420 bp Feature: gene Location: 166600-167967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166927-167548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166927-167548 bp Feature: domain Description: GIIM Note: maturase Location: 167599-167809 bp Feature: domain Description: GIIM Note: maturase Location: 167599-167809 bp Feature: gene Location: 168446-169666 bp Feature: domain Description: MFS_CitA Location: 168452-169649 bp Feature: domain Description: MFS_CitA Location: 168452-169649 bp Feature: gene Location: 170021-170668 bp Feature: domain Description: YceI Location: 170108-170663 bp Feature: domain Description: YceI Location: 170108-170663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SecD (COG0342), secF (PRK13022), RVT-GII, GIIM (pfam08388), MFS_CitA (cd17368), YceI (smart00867)

Seq: JACHDC010000017.1 Paraburkholderia sp. HC6.4b Ga0400090_17, whole genome shotgun sequence (229695 bp)
Overview 1 RT 1: 161785-165564 bp Neighborhood of RT #1 [161785, 165641] nifA RVT-GII FixJ Feature: gene Location: 161785-163623 bp Feature: domain Description: nifA Location: 161944-163621 bp Feature: domain Description: nifA Location: 16194 4 -163621 bp Feature: gene Location: 163899-164063 bp Feature: gene Location: 164089-164493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164149-164362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164 14 9-164 362 bp Feature: gene Location: 164635-164877 bp Feature: gene Location: 164994-165641 bp Feature: domain Description: FixJ Location: 165450-165564 bp Feature: domain Description: FixJ Location: 1654 50-165564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nifA (TIGR01817), RVT-GII, FixJ (COG4566)