myRT

myRT report for GCA_014200925.1_ASM1420092v1

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Seq: JACHDE010000007.1 Paraburkholderia sp. JPY162 Ga0400094_07, whole genome shotgun sequence (325863 bp)
Overview 1 RT 1: 15237-18295 bp Neighborhood of RT #1 [15237, 18300] APH RVT-GII group_II_RT_mat gram_neg_porins Feature: gene Location: 15237-16016 bp Feature: domain Description: APH Location: 15318-15903 bp Feature: domain Description: APH Location: 1 531 8-1 5903 bp Feature: gene Location: 16137-16646 bp Feature: gene Location: 16759-17043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16774-17038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6774-1 7038 bp Feature: gene Location: 17037-17576 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 17079-17454 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 7079-1 7454 bp Feature: gene Location: 18088-18300 bp Feature: domain Description: gram_neg_porins Location: 18103-18295 bp Feature: domain Description: gram_neg_porins Location: 1 81 03-1 8295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT APH (pfam01636), RVT-GII, group_II_RT_mat (TIGR04416), gram_neg_porins (cd00342)

Seq: JACHDE010000022.1 Paraburkholderia sp. JPY162 Ga0400094_22, whole genome shotgun sequence (110348 bp)
Overview 1 RT 1: 91572-95053 bp Neighborhood of RT #1 [91572, 95053] RVT-GII GIIM Feature: gene Location: 91572-91808 bp Feature: gene Location: 91991-92395 bp Feature: gene Location: 92451-93767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92748-93411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 748-93411 bp Feature: domain Description: GIIM Note: maturase Location: 93480-93696 bp Feature: domain Description: GIIM Note: maturase Location: 93480-93696 bp Feature: gene Location: 94142-94405 bp Feature: gene Location: 94610-95053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACHDE010000026.1 Paraburkholderia sp. JPY162 Ga0400094_26, whole genome shotgun sequence (67599 bp)
Overview 1 RT 1: 47615-52960 bp Neighborhood of RT #1 [47615, 53058] COG3547 RVT_N RVT-GII GIIM SRAP RES Feature: gene Location: 47615-47788 bp Feature: gene Location: 48055-48903 bp Feature: domain Description: COG3547 Location: 48106-48850 bp Feature: domain Description: COG3 547 Location: 48106-48850 bp Feature: gene Location: 48986-50482 bp Feature: RT Description: RVT_N Location: 49034-49277 bp Feature: RT Description: RVT_N Location: 4903 4-49277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49322-49961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493 22-49961 bp Feature: domain Description: GIIM Note: maturase Location: 50015-50249 bp Feature: domain Description: GIIM Note: maturase Location: 50015-50249 bp Feature: gene Location: 51443-51874 bp Feature: domain Description: SRAP Location: 51566-51827 bp Feature: domain Description: SRAP Location: 51566-51827 bp Feature: gene Location: 52456-53058 bp Feature: domain Description: RES Location: 52579-52960 bp Feature: domain Description: RES Location: 52579-52960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SRAP (pfam02586), RES (smart00953)

Seq: JACHDE010000055.1 Paraburkholderia sp. JPY162 Ga0400094_55, whole genome shotgun sequence (10136 bp)
Overview 1 RT 1: 6834-9875 bp Neighborhood of RT #1 [6834, 9952] Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM Feature: gene Location: 6834-7073 bp Feature: gene Location: 7210-8967 bp Feature: domain Description: Resolvase Location: 7231-7672 bp Feature: domain Description: Resolvase Location: 7231-7672 bp Feature: domain Description: Recombinase Location: 7765-8122 bp Feature: domain Description: Recombinase Location: 7765-8122 bp Feature: domain Description: Zn_ribbon_recom Location: 8167-8371 bp Feature: domain Description: Zn_ribbon_recom Location: 8167-8371 bp Feature: gene Location: 9308-9952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9314-9569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9314 -9569 bp Feature: domain Description: GIIM Note: maturase Location: 9647-9875 bp Feature: domain Description: GIIM Note: maturase Location: 964 7-9875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, GIIM (pfam08388)

Seq: JACHDE010000071.1 Paraburkholderia sp. JPY162 Ga0400094_71, whole genome shotgun sequence (1856 bp)
Overview 1 RT 1: 88-1219 bp Neighborhood of RT #1 [88, 1377] RVT-GII GIIM Feature: gene Location: 88-1377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-95 8 bp Feature: domain Description: GIIM Note: maturase Location: 1018-1219 bp Feature: domain Description: GIIM Note: maturase Location: 1018-1219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)