myRT

myRT report for GCA_014200995.1_ASM1420099v1

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Seq: JACHDJ010000001.1 Paraburkholderia sp. WSM4177 Ga0400130_01, whole genome shotgun sequence (739644 bp)
Overview 1 RT 1: 208927-215744 bp Neighborhood of RT #1 [208927, 216208] HNHc DUF4238 CoiA RVT-UG15 HEPN Recombinase Feature: gene Location: 208927-210234 bp Feature: domain Description: HNHc Note: nucleases Location: 209047-209152 bp Feature: domain Description: HNHc Note: nucleases Location: 209047-2091 52 bp Feature: domain Description: DUF4238 Location: 209281-210046 bp Feature: domain Description: DUF4238 Location: 209281 -21 0046 bp Feature: gene Location: 210197-211621 bp Feature: domain Description: CoiA Location: 210227-210431 bp Feature: domain Description: CoiA Location: 21 0227-21 0431 bp Feature: gene Location: 211961-213391 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 212177-212585 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 21 21 77-21 2585 bp Feature: gene Location: 213776-214372 bp Feature: domain Description: HEPN Location: 214007-214253 bp Feature: domain Description: HEPN Location: 21 4007-21 4253 bp Feature: gene Location: 215222-216208 bp Feature: domain Description: Recombinase Location: 215438-215744 bp Feature: domain Description: Recombinase Location: 21 5438-21 5744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), DUF4238 (pfam14022), CoiA (pfam06054), RVT-UG15, HEPN (smart00748), Recombinase (pfam07508)

Seq: JACHDJ010000009.1 Paraburkholderia sp. WSM4177 Ga0400130_09, whole genome shotgun sequence (279064 bp)
Overview 1 RT 1: 25641-30414 bp Neighborhood of RT #1 [25641, 30414] Rve RVT-GII GIIM RVT-GII Feature: gene Location: 25641-27257 bp Feature: gene Location: 27315-27596 bp Feature: domain Description: Rve Location: 27318-27555 bp Feature: domain Description: Rve Location: 2 7318-2 7555 bp Feature: gene Location: 27981-28601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27987-28221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7987-2 82 2 1 bp Feature: domain Description: GIIM Note: maturase Location: 28296-28518 bp Feature: domain Description: GIIM Note: maturase Location: 2 82 96-2 8518 bp Feature: gene Location: 28607-28945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28610-28910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8610-2 8910 bp Feature: gene Location: 29681-29860 bp Feature: gene Location: 30202-30414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388)

Seq: JACHDJ010000020.1 Paraburkholderia sp. WSM4177 Ga0400130_20, whole genome shotgun sequence (104324 bp)
Overview 1 RT 1: 38432-42533 bp Neighborhood of RT #1 [38432, 42535] FixJ RVT-GII nifA Feature: gene Location: 38432-39154 bp Feature: domain Description: FixJ Location: 38963-39083 bp Feature: domain Description: FixJ Location: 3 8963 -3 9083 bp Feature: gene Location: 39184-39426 bp Feature: gene Location: 39568-39975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39631-39841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 963 1-3 9841 bp Feature: gene Location: 40099-40236 bp Feature: gene Location: 40700-42535 bp Feature: domain Description: nifA Location: 40859-42533 bp Feature: domain Description: nifA Location: 40859-4253 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FixJ (COG4566), RVT-GII, nifA (TIGR01817)