myRT

myRT report for GCA_014201005.1_ASM1420100v1

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Seq: JACHDK010000001.1 Paraburkholderia sp. WSM4180 Ga0400132_01, whole genome shotgun sequence (739656 bp)
Overview 1 RT 1: 208927-215744 bp Neighborhood of RT #1 [208927, 216208] HNHc DUF4238 CoiA RVT-UG15 HEPN Recombinase Feature: gene Location: 208927-210234 bp Feature: domain Description: HNHc Note: nucleases Location: 209047-209152 bp Feature: domain Description: HNHc Note: nucleases Location: 209047-2091 52 bp Feature: domain Description: DUF4238 Location: 209281-210046 bp Feature: domain Description: DUF4238 Location: 209281 -21 0046 bp Feature: gene Location: 210197-211621 bp Feature: domain Description: CoiA Location: 210227-210431 bp Feature: domain Description: CoiA Location: 21 0227-21 0431 bp Feature: gene Location: 211961-213391 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 212177-212585 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 21 21 77-21 2585 bp Feature: gene Location: 213776-214372 bp Feature: domain Description: HEPN Location: 214007-214253 bp Feature: domain Description: HEPN Location: 21 4007-21 4253 bp Feature: gene Location: 215222-216208 bp Feature: domain Description: Recombinase Location: 215438-215744 bp Feature: domain Description: Recombinase Location: 21 5438-21 5744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), DUF4238 (pfam14022), CoiA (pfam06054), RVT-UG15, HEPN (smart00748), Recombinase (pfam07508)

Seq: JACHDK010000009.1 Paraburkholderia sp. WSM4180 Ga0400132_09, whole genome shotgun sequence (339003 bp)
Overview 1 RT 1: 85580-90353 bp Neighborhood of RT #1 [85580, 90353] Rve RVT-GII GIIM RVT-GII Feature: gene Location: 85580-87196 bp Feature: gene Location: 87254-87535 bp Feature: domain Description: Rve Location: 87257-87494 bp Feature: domain Description: Rve Location: 872 57-87494 bp Feature: gene Location: 87920-88540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87926-88160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8792 6-88160 bp Feature: domain Description: GIIM Note: maturase Location: 88235-88457 bp Feature: domain Description: GIIM Note: maturase Location: 882 35-88457 bp Feature: gene Location: 88546-88884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88549-88849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88549-88849 bp Feature: gene Location: 89620-89799 bp Feature: gene Location: 90141-90353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388)

Seq: JACHDK010000020.1 Paraburkholderia sp. WSM4180 Ga0400132_20, whole genome shotgun sequence (104324 bp)
Overview 1 RT 1: 61327-65822 bp Neighborhood of RT #1 [61327, 65893] nifA RVT-GII FixJ Feature: gene Location: 61327-61485 bp Feature: gene Location: 61790-63625 bp Feature: domain Description: nifA Location: 61949-63623 bp Feature: domain Description: nifA Location: 61949-63 623 bp Feature: gene Location: 64350-64757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64413-64623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64413 -64623 bp Feature: gene Location: 64899-65141 bp Feature: gene Location: 65171-65893 bp Feature: domain Description: FixJ Location: 65702-65822 bp Feature: domain Description: FixJ Location: 65702-65822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nifA (TIGR01817), RVT-GII, FixJ (COG4566)