myRT

myRT report for GCA_014201065.1_ASM1420106v1

Download annotations/find similar RTs

Seq: JACHDM010000010.1 Paraburkholderia sp. Cpub6 Ga0400087_10, whole genome shotgun sequence (234907 bp)
Overview 1 RT 1: 102375-112251 bp Neighborhood of RT #1 [102375, 112295] STKc_PknB_like COG3899 FhlA COG4191 Rve RVT-GII GIIM PinE Zn_ribbon_recom HTH_17 HTH_17 Feature: gene Location: 102375-107951 bp Feature: domain Description: STKc_PknB_like Location: 102567-103224 bp Feature: domain Description: STKc_PknB_like Location: 1 02567-1 03224 bp Feature: domain Description: COG3899 Location: 103317-105531 bp Feature: domain Description: COG3899 Location: 1 0331 7-1 05531 bp Feature: domain Description: FhlA Location: 106101-107010 bp Feature: domain Description: FhlA Location: 1 061 01 -1 0701 0 bp Feature: domain Description: COG4191 Location: 107166-107913 bp Feature: domain Description: COG41 91 Location: 1 071 66-1 0791 3 bp Feature: gene Location: 108055-108432 bp Feature: domain Description: Rve Location: 108061-108382 bp Feature: domain Description: Rve Location: 1 08061 -1 08382 bp Feature: gene Location: 108560-109606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108569-109064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 08569-1 09064 bp Feature: domain Description: GIIM Note: maturase Location: 109157-109337 bp Feature: domain Description: GIIM Note: maturase Location: 1 091 57-1 09337 bp Feature: gene Location: 109919-110083 bp Feature: gene Location: 110076-112295 bp Feature: domain Description: PinE Location: 110124-110712 bp Feature: domain Description: PinE Location: 1 1 01 24-1 1 071 2 bp Feature: domain Description: Zn_ribbon_recom Location: 111078-111243 bp Feature: domain Description: Zn_ribbon_recom Location: 1 1 1 078-1 1 1 243 bp Feature: domain Description: HTH_17 Location: 111957-112077 bp Feature: domain Description: HTH_1 7 Location: 1 1 1 957-1 1 2077 bp Feature: domain Description: HTH_17 Location: 112146-112251 bp Feature: domain Description: HTH_1 7 Location: 1 1 21 46-1 1 2251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), COG3899 (Predicted ATPase ), FhlA (COG3604), COG4191 (Signal transduction histidine kinase regulating C4-dicarboxylate transport system ), Rve (COG3316), RVT-GII, GIIM (pfam08388), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728)

Seq: JACHDM010000012.1 Paraburkholderia sp. Cpub6 Ga0400087_12, whole genome shotgun sequence (208148 bp)
Overview 1 RT 1: 202978-207885 bp Neighborhood of RT #1 [202978, 207896] IclR RVT-GII GIIM pbpG Feature: gene Location: 202978-203187 bp Feature: gene Location: 203251-204096 bp Feature: domain Description: IclR Location: 203338-204064 bp Feature: domain Description: IclR Location: 2 03338-2 04064 bp Feature: gene Location: 205553-206215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205559-205832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 05559-2 05832 bp Feature: domain Description: GIIM Note: maturase Location: 205910-206141 bp Feature: domain Description: GIIM Note: maturase Location: 2 05910-2 06141 bp Feature: gene Location: 206756-207052 bp Feature: gene Location: 207063-207896 bp Feature: domain Description: pbpG Location: 207084-207885 bp Feature: domain Description: pbpG Location: 2 07084-2 07885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IclR (pfam01614), RVT-GII, GIIM (pfam08388), pbpG (PRK11669)

Seq: JACHDM010000027.1 Paraburkholderia sp. Cpub6 Ga0400087_27, whole genome shotgun sequence (84186 bp)
Overview 1 RT 1: 43971-47833 bp Neighborhood of RT #1 [43971, 47904] nifA RVT-GII FixJ Feature: gene Location: 43971-45809 bp Feature: domain Description: nifA Location: 44130-45807 bp Feature: domain Description: nifA Location: 4413 0-45807 bp Feature: gene Location: 46113-46247 bp Feature: gene Location: 46385-46759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46445-46658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46445-46658 bp Feature: gene Location: 46769-47086 bp Feature: gene Location: 47113-47904 bp Feature: domain Description: FixJ Location: 47713-47833 bp Feature: domain Description: FixJ Location: 47713 -4783 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nifA (TIGR01817), RVT-GII, FixJ (COG4566)

Seq: JACHDM010000058.1 Paraburkholderia sp. Cpub6 Ga0400087_58, whole genome shotgun sequence (11430 bp)
Overview 1 RT 1: 280-9394 bp Neighborhood of RT #1 [280, 9394] dnaG RVT-UNC Feature: gene Location: 280-7944 bp Feature: domain Description: dnaG Location: 319-1543 bp Feature: domain Description: dnaG Location: 319-154 3 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2332-2920 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2332-2920 bp Feature: gene Location: 8307-8810 bp Feature: gene Location: 8984-9394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG10/RVT-DGRs/RVT-UG17/RVT-UG3(RVT-UNC)