myRT

myRT report for GCA_014201115.1_ASM1420111v1

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Seq: JACHDO010000001.1 Nocardiopsis metallicus strain DSM 44598 Ga0415211_01, whole genome shotgun sequence (7747323 bp)
Overview 1 RT 1: 314437-320328 bp 2 RT 2: 570085-576040 bp 3 RT 3: 2376692-2382560 bp 4 RT 4: 2407016-2410519 bp 5 RT 5: 3089189-3096473 bp 6 RT 6: 3242558-3249008 bp 7 RT 7: 3486989-3491521 bp 8 RT 8: 4374236-4380460 bp 9 RT 9: 4661901-4667206 bp 10 RT 10: 5100885-5105393 bp 11 RT 11: 5313368-5321107 bp 12 RT 12: 5507207-5511916 bp 13 RT 13: 5720802-5726515 bp 14 RT 14: 6767748-6772354 bp 15 RT 15: 7442810-7449231 bp 16 RT 16: 7656897-7663840 bp Neighborhood of RT #1 [314437, 320342] RVT-GII GIIM Methyltransf_19 RibD Neighborhood of RT #2 [570085, 576057] PRK09256 rpsA RVT-GII GIIM Acetyltransf_10 coaE Neighborhood of RT #3 [2376692, 2382583] AraC DDE_Tnp_4 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [2407016, 2410519] RVT-GII GIIM xerC Neighborhood of RT #5 [3089189, 3096544] Glyoxalase_6 RVT-GII GIIM uvrA R_switched_Alx Neighborhood of RT #6 [3242558, 3249008] Smc NYN_YacP Spr RVT-GII GIIM Spr Neighborhood of RT #7 [3486989, 3491619] HTH_XRE DDE_Tnp_4 RVT-GII GIIM HTH_MerR-trunc Neighborhood of RT #8 [4374236, 4380558] SrmB MhpC RVT-GII GIIM TTHA1623-like_MBL-fold PHP_HisPPase_AMP Neighborhood of RT #9 [4661901, 4667406] MHYT DDE_Tnp_4 RVT-GII GIIM MHYT Tryp_SPc Neighborhood of RT #10 [5100885, 5105641] RVT-GII GIIM Slt35_like Spr Replic_Relax Neighborhood of RT #11 [5313368, 5321109] DUF397 ACAD RVT-GII GIIM PRK07209 PRK07207 Neighborhood of RT #12 [5507207, 5512011] STAS_anti-anti-sigma_factors HATPase_c_2 RVT-GII GIIM Colicin_V Trypsin_2 CoAse Neighborhood of RT #13 [5720802, 5726532] PRK01315 Jag RVT-GII GIIM gidB BcsQ Neighborhood of RT #14 [6767748, 6772354] PRK03072 DUF520 RVT-GII GIIM Neighborhood of RT #15 [7442810, 7449236] cysKM DDE_5 RVT-GII GIIM RNaseZ_short-form-like_MBL-fold rph Neighborhood of RT #16 [7656897, 7663840] zf-IS66 DDE_Tnp_IS66 HTH_Tnp_4 DDE_Tnp_4 RVT-GII GIIM PRK05326 Feature: gene Location: 314437-314970 bp Feature: gene Location: 314973-315365 bp Feature: gene Location: 316253-317500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316436-317051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 6436-31 7051 bp Feature: domain Description: GIIM Note: maturase Location: 317108-317327 bp Feature: domain Description: GIIM Note: maturase Location: 31 71 08-31 7327 bp Feature: gene Location: 318109-318996 bp Feature: domain Description: Methyltransf_19 Location: 318187-318991 bp Feature: domain Description: Methyltransf_1 9 Location: 31 81 87-31 8991 bp Feature: gene Location: 319641-320342 bp Feature: domain Description: RibD Location: 319647-320328 bp Feature: domain Description: RibD Location: 31 9647-320328 bp Feature: gene Location: 570085-570528 bp Feature: domain Description: PRK09256 Location: 570133-570517 bp Feature: domain Description: PRK09256 Location: 5701 33-57051 7 bp Feature: gene Location: 571085-572587 bp Feature: domain Description: rpsA Location: 571100-572579 bp Feature: domain Description: rpsA Location: 571 1 00-572579 bp Feature: gene Location: 573260-574507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573443-574058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573443-574058 bp Feature: domain Description: GIIM Note: maturase Location: 574115-574334 bp Feature: domain Description: GIIM Note: maturase Location: 5741 1 5-574334 bp Feature: gene Location: 574908-575405 bp Feature: domain Description: Acetyltransf_10 Location: 575043-575379 bp Feature: domain Description: Acetyltransf_1 0 Location: 575043-575379 bp Feature: gene Location: 575455-576057 bp Feature: domain Description: coaE Location: 575458-576040 bp Feature: domain Description: coaE Location: 575458-576040 bp Feature: gene Location: 2376692-2377522 bp Feature: domain Description: AraC Location: 2376704-2377016 bp Feature: domain Description: AraC Location: 2376704-237701 6 bp Feature: gene Location: 2378149-2378970 bp Feature: domain Description: DDE_Tnp_4 Location: 2378470-2378953 bp Feature: domain Description: DDE_Tnp_4 Location: 2378470-2378953 bp Feature: gene Location: 2379725-2381194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2380079-2380760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2380079-2380760 bp Feature: domain Description: GIIM Note: maturase Location: 2380829-2381060 bp Feature: domain Description: GIIM Note: maturase Location: 2380829-2381 060 bp Feature: gene Location: 2381403-2382257 bp Feature: domain Description: PHA02517 Location: 2381406-2382216 bp Feature: domain Description: PHA0251 7 Location: 2381 406-238221 6 bp Feature: gene Location: 2382314-2382583 bp Feature: domain Description: InsE Location: 2382350-2382560 bp Feature: domain Description: InsE Location: 2382350-2382560 bp Feature: gene Location: 2407016-2408263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2407199-2407814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24071 99-240781 4 bp Feature: domain Description: GIIM Note: maturase Location: 2407871-2408090 bp Feature: domain Description: GIIM Note: maturase Location: 2407871 -2408090 bp Feature: gene Location: 2408904-2409797 bp Feature: domain Description: xerC Location: 2408916-2409693 bp Feature: domain Description: xerC Location: 240891 6-2409693 bp Feature: gene Location: 2410094-2410519 bp Feature: gene Location: 3089189-3089845 bp Feature: gene Location: 3089953-3090321 bp Feature: domain Description: Glyoxalase_6 Location: 3089977-3090307 bp Feature: domain Description: Glyoxalase_6 Location: 3089977-3090307 bp Feature: gene Location: 3090405-3091652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3090588-3091203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3090588-3091 203 bp Feature: domain Description: GIIM Note: maturase Location: 3091260-3091479 bp Feature: domain Description: GIIM Note: maturase Location: 3091 260-3091 479 bp Feature: gene Location: 3092302-3095148 bp Feature: domain Description: uvrA Location: 3092320-3095146 bp Feature: domain Description: uvrA Location: 3092320-30951 46 bp Feature: gene Location: 3095519-3096544 bp Feature: domain Description: R_switched_Alx Location: 3095534-3096473 bp Feature: domain Description: R_switched_Alx Location: 3095534-3096473 bp Feature: gene Location: 3242558-3243952 bp Feature: domain Description: Smc Location: 3243017-3243365 bp Feature: domain Description: Smc Location: 324301 7-3243365 bp Feature: domain Description: NYN_YacP Location: 3243587-3243944 bp Feature: domain Description: NYN_YacP Location: 3243587-3243944 bp Feature: gene Location: 3244403-3245350 bp Feature: domain Description: Spr Location: 3244715-3245294 bp Feature: domain Description: Spr Location: 324471 5-3245294 bp Feature: gene Location: 3246004-3247251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3246187-3246802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32461 87-3246802 bp Feature: domain Description: GIIM Note: maturase Location: 3246859-3247078 bp Feature: domain Description: GIIM Note: maturase Location: 3246859-3247078 bp Feature: gene Location: 3247707-3248669 bp Feature: domain Description: Spr Location: 3248139-3248643 bp Feature: domain Description: Spr Location: 32481 39-3248643 bp Feature: gene Location: 3248874-3249008 bp Feature: gene Location: 3486989-3487765 bp Feature: domain Description: HTH_XRE Location: 3487019-3487163 bp Feature: domain Description: HTH_XRE Location: 348701 9-34871 63 bp Feature: gene Location: 3487921-3488730 bp Feature: domain Description: DDE_Tnp_4 Location: 3488239-3488713 bp Feature: domain Description: DDE_Tnp_4 Location: 3488239-348871 3 bp Feature: gene Location: 3489367-3490836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3489721-3490402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3489721 -3490402 bp Feature: domain Description: GIIM Note: maturase Location: 3490471-3490702 bp Feature: domain Description: GIIM Note: maturase Location: 3490471 -3490702 bp Feature: gene Location: 3491042-3491410 bp Feature: gene Location: 3491329-3491619 bp Feature: domain Description: HTH_MerR-trunc Location: 3491449-3491521 bp Feature: domain Description: HTH_MerR-trunc Location: 3491 449-3491 521 bp Feature: gene Location: 4374236-4375642 bp Feature: domain Description: SrmB Location: 4374263-4375295 bp Feature: domain Description: SrmB Location: 4374263-4375295 bp Feature: gene Location: 4375796-4376614 bp Feature: domain Description: MhpC Location: 4375826-4376585 bp Feature: domain Description: MhpC Location: 4375826-4376585 bp Feature: gene Location: 4376696-4377943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4376879-4377494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4376879-4377494 bp Feature: domain Description: GIIM Note: maturase Location: 4377551-4377770 bp Feature: domain Description: GIIM Note: maturase Location: 4377551 -4377770 bp Feature: gene Location: 4378591-4379625 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 4379074-4379605 bp Feature: domain Description: TTHA1 623-like_MBL-fold Location: 4379074-4379605 bp Feature: gene Location: 4379683-4380558 bp Feature: domain Description: PHP_HisPPase_AMP Location: 4379695-4380460 bp Feature: domain Description: PHP_HisPPase_AMP Location: 4379695-4380460 bp Feature: gene Location: 4661901-4662659 bp Feature: domain Description: MHYT Location: 4661940-4662588 bp Feature: domain Description: MHYT Location: 4661 940-4662588 bp Feature: gene Location: 4662851-4663660 bp Feature: domain Description: DDE_Tnp_4 Location: 4663169-4663643 bp Feature: domain Description: DDE_Tnp_4 Location: 46631 69-4663643 bp Feature: gene Location: 4664297-4665766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4664651-4665332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4664651 -4665332 bp Feature: domain Description: GIIM Note: maturase Location: 4665401-4665632 bp Feature: domain Description: GIIM Note: maturase Location: 4665401 -4665632 bp Feature: gene Location: 4666007-4666858 bp Feature: domain Description: MHYT Location: 4666022-4666667 bp Feature: domain Description: MHYT Location: 4666022-4666667 bp Feature: gene Location: 4666420-4667406 bp Feature: domain Description: Tryp_SPc Location: 4666870-4667206 bp Feature: domain Description: Tryp_SPc Location: 4666870-4667206 bp Feature: gene Location: 5100885-5101412 bp Feature: gene Location: 5101409-5101960 bp Feature: gene Location: 5102084-5103331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5102267-5102882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 02267-51 02882 bp Feature: domain Description: GIIM Note: maturase Location: 5102939-5103158 bp Feature: domain Description: GIIM Note: maturase Location: 51 02939-51 031 58 bp Feature: gene Location: 5104183-5105205 bp Feature: domain Description: Slt35_like Location: 5104324-5104747 bp Feature: domain Description: Slt35_like Location: 51 04324-51 04747 bp Feature: domain Description: Spr Location: 5104813-5105176 bp Feature: domain Description: Spr Location: 51 0481 3-51 051 76 bp Feature: gene Location: 5105261-5105641 bp Feature: domain Description: Replic_Relax Location: 5105267-5105393 bp Feature: domain Description: Replic_Relax Location: 51 05267-51 05393 bp Feature: gene Location: 5313368-5313580 bp Feature: domain Description: DUF397 Location: 5313413-5313560 bp Feature: domain Description: DUF397 Location: 531 341 3-531 3560 bp Feature: gene Location: 5314000-5315205 bp Feature: domain Description: ACAD Location: 5314027-5315119 bp Feature: domain Description: ACAD Location: 531 4027-531 51 1 9 bp Feature: gene Location: 5315450-5316697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5315633-5316248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531 5633-531 6248 bp Feature: domain Description: GIIM Note: maturase Location: 5316305-5316524 bp Feature: domain Description: GIIM Note: maturase Location: 531 6305-531 6524 bp Feature: gene Location: 5317362-5318444 bp Feature: domain Description: PRK07209 Location: 5317380-5318442 bp Feature: domain Description: PRK07209 Location: 531 7380-531 8442 bp Feature: gene Location: 5318554-5321109 bp Feature: domain Description: PRK07207 Location: 5318623-5321107 bp Feature: domain Description: PRK07207 Location: 531 8623-5321 1 07 bp Feature: gene Location: 5507207-5507548 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 5507219-5507507 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 550721 9-5507507 bp Feature: gene Location: 5507562-5508116 bp Feature: domain Description: HATPase_c_2 Location: 5507586-5508075 bp Feature: domain Description: HATPase_c_2 Location: 5507586-5508075 bp Feature: gene Location: 5508769-5510016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5508952-5509567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5508952-5509567 bp Feature: domain Description: GIIM Note: maturase Location: 5509624-5509843 bp Feature: domain Description: GIIM Note: maturase Location: 5509624-5509843 bp Feature: gene Location: 5510156-5511334 bp Feature: domain Description: Colicin_V Location: 5510162-5510588 bp Feature: domain Description: Colicin_V Location: 551 01 62-551 0588 bp Feature: domain Description: Trypsin_2 Location: 5510801-5511212 bp Feature: domain Description: Trypsin_2 Location: 551 0801 -551 1 21 2 bp Feature: gene Location: 5511358-5512011 bp Feature: domain Description: CoAse Location: 5511454-5511916 bp Feature: domain Description: CoAse Location: 551 1 454-551 1 91 6 bp Feature: gene Location: 5720802-5721737 bp Feature: domain Description: PRK01315 Location: 5720817-5721729 bp Feature: domain Description: PRK01 31 5 Location: 572081 7-5721 729 bp Feature: gene Location: 5721881-5722369 bp Feature: domain Description: Jag Location: 5721926-5722361 bp Feature: domain Description: Jag Location: 5721 926-5722361 bp Feature: gene Location: 5723018-5724265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5723201-5723816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5723201 -572381 6 bp Feature: domain Description: GIIM Note: maturase Location: 5723873-5724092 bp Feature: domain Description: GIIM Note: maturase Location: 5723873-5724092 bp Feature: gene Location: 5724821-5725495 bp Feature: domain Description: gidB Location: 5724857-5725337 bp Feature: domain Description: gidB Location: 5724857-5725337 bp Feature: gene Location: 5725756-5726532 bp Feature: domain Description: BcsQ Location: 5725762-5726515 bp Feature: domain Description: BcsQ Location: 5725762-572651 5 bp Feature: gene Location: 6767748-6768644 bp Feature: domain Description: PRK03072 Location: 6767787-6768627 bp Feature: domain Description: PRK03072 Location: 6767787-6768627 bp Feature: gene Location: 6768702-6769199 bp Feature: domain Description: DUF520 Location: 6768717-6769197 bp Feature: domain Description: DUF520 Location: 676871 7-67691 97 bp Feature: gene Location: 6770140-6771387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6770323-6770938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6770323-6770938 bp Feature: domain Description: GIIM Note: maturase Location: 6770995-6771214 bp Feature: domain Description: GIIM Note: maturase Location: 6770995-6771 21 4 bp Feature: gene Location: 6771807-6772052 bp Feature: gene Location: 6772109-6772354 bp Feature: gene Location: 7442810-7443757 bp Feature: domain Description: cysKM Location: 7442834-7443704 bp Feature: domain Description: cysKM Location: 7442834-7443704 bp Feature: gene Location: 7443918-7445351 bp Feature: domain Description: DDE_5 Location: 7443984-7444770 bp Feature: domain Description: DDE_5 Location: 7443984-7444770 bp Feature: gene Location: 7446038-7447285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7446221-7446836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7446221 -7446836 bp Feature: domain Description: GIIM Note: maturase Location: 7446893-7447112 bp Feature: domain Description: GIIM Note: maturase Location: 7446893-74471 1 2 bp Feature: gene Location: 7447617-7448369 bp Feature: domain Description: RNaseZ_short-form-like_MBL-fold Location: 7447623-7448157 bp Feature: domain Description: RNaseZ_short-form-like_MBL-fold Location: 7447623-74481 57 bp Feature: gene Location: 7448553-7449236 bp Feature: domain Description: rph Location: 7448559-7449231 bp Feature: domain Description: rph Location: 7448559-7449231 bp Feature: gene Location: 7656897-7658393 bp Feature: domain Description: zf-IS66 Location: 7657269-7657407 bp Feature: domain Description: zf-IS66 Location: 7657269-7657407 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7657455-7658271 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7657455-7658271 bp Feature: gene Location: 7658605-7659369 bp Feature: domain Description: HTH_Tnp_4 Location: 7658707-7658860 bp Feature: domain Description: HTH_Tnp_4 Location: 7658707-7658860 bp Feature: domain Description: DDE_Tnp_4 Location: 7658917-7659349 bp Feature: domain Description: DDE_Tnp_4 Location: 765891 7-7659349 bp Feature: gene Location: 7660113-7661582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7660467-7661148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7660467-7661 1 48 bp Feature: domain Description: GIIM Note: maturase Location: 7661217-7661448 bp Feature: domain Description: GIIM Note: maturase Location: 7661 21 7-7661 448 bp Feature: gene Location: 7661764-7663140 bp Feature: domain Description: PRK05326 Location: 7661767-7663087 bp Feature: domain Description: PRK05326 Location: 7661 767-7663087 bp Feature: gene Location: 7663628-7663840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Methyltransf_19 (pfam04672), RibD (COG1985), PRK09256 (aminoacyl-tRNA hydrolase), rpsA (TIGR00717), Acetyltransf_10 (pfam13673), coaE (PRK14734), AraC (COG2207), DDE_Tnp_4 (pfam13359)
PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), xerC (PRK01287), Glyoxalase_6 (pfam18029), uvrA (PRK00349), R_switched_Alx (TIGR03718), Smc (COG1196), NYN_YacP (pfam05991), Spr (COG0791), HTH_XRE (smart00530)
HTH_MerR-trunc (cd04762), SrmB (COG0513), MhpC (COG0596), TTHA1623-like_MBL-fold (cd16322), PHP_HisPPase_AMP (cd07438), MHYT (pfam03707), Tryp_SPc (smart00020), Slt35_like, Replic_Relax (pfam13814), DUF397 (pfam04149)
ACAD (cl09933), PRK07209 (ribonucleotide-diphosphate reductase subunit beta; Validated), PRK07207 (ribonucleoside-diphosphate reductase subunit alpha), STAS_anti-anti-sigma_factors (cd07043), HATPase_c_2 (pfam13581), Colicin_V (pfam02674), Trypsin_2 (pfam13365), CoAse (cd03426), PRK01315 (putative inner membrane protein translocase component YidC; Provisional), Jag (COG1847)
gidB (PRK00107), BcsQ (COG1192), PRK03072 (heat shock protein HtpX; Provisional), DUF520 (pfam04461), cysKM (TIGR01136), DDE_5 (pfam13546), RNaseZ_short-form-like_MBL-fold (cd07716), rph (PRK00173), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)
HTH_Tnp_4 (pfam13613), PRK05326 (potassium/proton antiporter)