myRT

myRT report for GCA_014201715.1_ASM1420171v1

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Seq: JACHFD010000007.1 Haloferula luteola strain YC6886 Ga0415357_07, whole genome shotgun sequence (233031 bp)
Overview 1 RT 1: 214323-223676 bp Neighborhood of RT #1 [214323, 223804] dnaG RVT-UNC Spo0J Feature: gene Location: 214323-214715 bp Feature: gene Location: 215462-215602 bp Feature: gene Location: 215809-222849 bp Feature: domain Description: dnaG Location: 216010-216535 bp Feature: domain Description: dnaG Location: 21 601 0-21 6535 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 217426-217987 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 21 7426-21 7987 bp Feature: gene Location: 222925-223347 bp Feature: gene Location: 223391-223804 bp Feature: domain Description: Spo0J Location: 223529-223676 bp Feature: domain Description: Spo0J Location: 223529-223676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG3/RVT-DGRs/RVT-UG10/RVT-Retrons(RVT-UNC), Spo0J (COG1475)

Seq: JACHFD010000015.1 Haloferula luteola strain YC6886 Ga0415357_15, whole genome shotgun sequence (104943 bp)
Overview 1 RT 1: 1021-6738 bp Neighborhood of RT #1 [1021, 6743] Tra8 RVT-GII GIIM YlaK Feature: gene Location: 1021-1944 bp Feature: domain Description: Tra8 Location: 1039-1912 bp Feature: domain Description: Tra8 Location: 1039-1912 bp Feature: gene Location: 1947-2414 bp Feature: gene Location: 2563-3609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2599-3217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 599-32 17 bp Feature: domain Description: GIIM Note: maturase Location: 3307-3508 bp Feature: domain Description: GIIM Note: maturase Location: 3307-3508 bp Feature: gene Location: 4266-5240 bp Feature: gene Location: 5373-6743 bp Feature: domain Description: YlaK Location: 5379-6738 bp Feature: domain Description: YlaK Location: 5379-6738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-GII, GIIM (pfam08388), YlaK (COG1875)

Seq: JACHFD010000025.1 Haloferula luteola strain YC6886 Ga0415357_25, whole genome shotgun sequence (56190 bp)
Overview 1 RT 1: 52105-54127 bp Neighborhood of RT #1 [52105, 54127] RVT-GII Feature: gene Location: 52105-52326 bp Feature: gene Location: 52397-52663 bp Feature: gene Location: 52735-52884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52756-52864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52756-52864 bp Feature: gene Location: 53281-53682 bp Feature: gene Location: 53774-54127 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACHFD010000026.1 Haloferula luteola strain YC6886 Ga0415357_26, whole genome shotgun sequence (50763 bp)
Overview 1 RT 1: 435-4026 bp Neighborhood of RT #1 [435, 4058] COG3464 COG3464 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 435-851 bp Feature: domain Description: COG3464 Location: 459-678 bp Feature: domain Description: COG34 64 Location: 4 59-678 bp Feature: domain Description: COG3464 Location: 678-798 bp Feature: domain Description: COG34 64 Location: 678-798 bp Feature: gene Location: 968-1138 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 977-1073 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 977-1073 bp Feature: gene Location: 1269-2510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1473-2130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 73-2130 bp Feature: domain Description: GIIM Note: maturase Location: 2208-2412 bp Feature: domain Description: GIIM Note: maturase Location: 2208-24 12 bp Feature: gene Location: 2653-2793 bp Feature: gene Location: 2988-4058 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3165-4026 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3165-4 026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)