myRT

myRT report for GCA_014203275.1_ASM1420327v1

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Seq: JACHIP010000003.1 Granulicella aggregans strain M8UP14 Ga0401177_03, whole genome shotgun sequence (877484 bp)
Overview 1 RT 1: 155416-160325 bp 2 RT 2: 518898-525733 bp Neighborhood of RT #1 [155416, 160327] COG5552 RVT-Retrons PRK09255 MhpD Neighborhood of RT #2 [518898, 525733] PRK01060 GlpE_ST RVT-Retrons leuS Feature: gene Location: 155416-155685 bp Feature: domain Description: COG5552 Location: 155419-155680 bp Feature: domain Description: COG5552 Location: 1 5541 9-1 55680 bp Feature: gene Location: 155928-156848 bp Feature: gene Location: 156845-157756 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 156944-157520 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 56944-1 57520 bp Feature: gene Location: 157847-159460 bp Feature: domain Description: PRK09255 Location: 157862-159425 bp Feature: domain Description: PRK09255 Location: 1 57862-1 59425 bp Feature: gene Location: 159557-160327 bp Feature: domain Description: MhpD Location: 159584-160325 bp Feature: domain Description: MhpD Location: 1 59584-1 60325 bp Feature: gene Location: 518898-519746 bp Feature: domain Description: PRK01060 Location: 518919-519687 bp Feature: domain Description: PRK01 060 Location: 51 891 9-51 9687 bp Feature: gene Location: 520043-520489 bp Feature: domain Description: GlpE_ST Location: 520148-520436 bp Feature: domain Description: GlpE_ST Location: 5201 48-520436 bp Feature: gene Location: 520710-522074 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 521298-521733 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 521 298-521 733 bp Feature: gene Location: 522213-524744 bp Feature: domain Description: leuS Location: 522249-524742 bp Feature: domain Description: leuS Location: 522249-524742 bp Feature: gene Location: 524747-525733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5552 (Uncharacterized protein ), RVT-Retrons, PRK09255 (malate synthase; Validated), MhpD (COG3971), PRK01060 (endonuclease IV; Provisional), GlpE_ST (cd01444), leuS (PRK12300)

Seq: JACHIP010000005.1 Granulicella aggregans strain M8UP14 Ga0401177_05, whole genome shotgun sequence (724557 bp)
Overview 1 RT 1: 7806-10063 bp Neighborhood of RT #1 [7806, 10065] RVT-GII COG3436 Feature: gene Location: 7806-8051 bp Feature: gene Location: 8186-8317 bp Feature: gene Location: 8675-8998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8879-8963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8879-8963 bp Feature: gene Location: 9007-9459 bp Feature: gene Location: 9550-10065 bp Feature: domain Description: COG3436 Location: 9844-10063 bp Feature: domain Description: COG3436 Location: 9844-10063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3436 (Transposase )

Seq: JACHIP010000026.1 Granulicella aggregans strain M8UP14 Ga0401177_26, whole genome shotgun sequence (31708 bp)
Overview 1 RT 1: 11099-15727 bp Neighborhood of RT #1 [11099, 15864] RVT-GII GIIM TIGR02246 Trans_reg_C TolBN PRK12370 TPR Feature: gene Location: 11099-11638 bp Feature: gene Location: 11677-11904 bp Feature: gene Location: 12187-13164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12193-12787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12193 -12787 bp Feature: domain Description: GIIM Note: maturase Location: 12859-13066 bp Feature: domain Description: GIIM Note: maturase Location: 12859-13 066 bp Feature: gene Location: 13443-13907 bp Feature: domain Description: TIGR02246 Location: 13512-13896 bp Feature: domain Description: TIGR02246 Location: 13 512-13 896 bp Feature: gene Location: 14047-15864 bp Feature: domain Description: Trans_reg_C Location: 14122-14338 bp Feature: domain Description: Trans_reg_C Location: 14122-143 3 8 bp Feature: domain Description: TolBN Location: 14368-14788 bp Feature: domain Description: TolBN Location: 143 68-14788 bp Feature: domain Description: PRK12370 Location: 15142-15394 bp Feature: domain Description: PRK123 70 Location: 15142-153 94 bp Feature: domain Description: TPR Location: 15547-15727 bp Feature: domain Description: TPR Location: 15547-15727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TIGR02246 (conserved hypothetical protein), Trans_reg_C (smart00862), TolBN (COG5616), PRK12370 (HilA/EilA family virulence transcriptional regulator), TPR (smart00028)