myRT

myRT report for GCA_014203395.1_ASM1420339v1

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Seq: JACHIW010000001.1 Saccharopolyspora phatthalungensis strain DSM 45584 Ga0436922_01, whole genome shotgun sequence (5889697 bp)
Overview 1 RT 1: 870193-879049 bp 2 RT 2: 3815996-3820568 bp 3 RT 3: 4256949-4268102 bp 4 RT 4: 4710342-4721656 bp 5 RT 5: 5265166-5270853 bp 6 RT 6: 5281951-5291464 bp Neighborhood of RT #1 [870193, 879141] BaeS PBP2_TAXI_TRAP_like_1 RVT-GII GIIM RVT-GII GIIM DDE_5 COG3293 COG3293 Neighborhood of RT #2 [3815996, 3820603] YigB RVT-CRISPR-like Flavoprotein Neighborhood of RT #3 [4256949, 4268149] PksD DAP2 CzcO RVT-CRISPR-like xerC xerC Neighborhood of RT #4 [4710342, 4721679] DUF2397 Nterm_IS4 DDE_Tnp_1 RVT-GII GIIM InsE RVT-GII GIIM RVT-GII GIIM PHA02517 xerC xerC Neighborhood of RT #5 [5265166, 5270882] Transposase_mut RVT-GII Intron_maturas2 PHA02517 InsE Neighborhood of RT #6 [5281951, 5291464] DDE_5 DDE_3 RVT-GII GIIM HTH_32 Feature: gene Location: 870193-871563 bp Feature: domain Description: BaeS Location: 870631-871552 bp Feature: domain Description: BaeS Location: 870631 -871 552 bp Feature: gene Location: 871563-872471 bp Feature: domain Description: PBP2_TAXI_TRAP_like_1 Location: 871644-872454 bp Feature: domain Description: PBP2_TAXI_TRAP_like_1 Location: 871 644-872454 bp Feature: gene Location: 872609-873970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872945-873584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872945-873584 bp Feature: domain Description: GIIM Note: maturase Location: 873665-873887 bp Feature: domain Description: GIIM Note: maturase Location: 873665-873887 bp Feature: gene Location: 874143-875375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874362-874983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874362-874983 bp Feature: domain Description: GIIM Note: maturase Location: 875061-875271 bp Feature: domain Description: GIIM Note: maturase Location: 875061 -875271 bp Feature: gene Location: 876682-878124 bp Feature: domain Description: DDE_5 Location: 876757-877543 bp Feature: domain Description: DDE_5 Location: 876757-877543 bp Feature: gene Location: 878239-879141 bp Feature: domain Description: COG3293 Location: 878284-878650 bp Feature: domain Description: COG3293 Location: 878284-878650 bp Feature: domain Description: COG3293 Location: 878662-879049 bp Feature: domain Description: COG3293 Location: 878662-879049 bp Feature: gene Location: 3815996-3816424 bp Feature: gene Location: 3816927-3817574 bp Feature: domain Description: YigB Location: 3816930-3817560 bp Feature: domain Description: YigB Location: 381 6930-381 7560 bp Feature: gene Location: 3818033-3818302 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3818057-3818258 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 381 8057-381 8258 bp Feature: gene Location: 3818686-3819672 bp Feature: gene Location: 3820067-3820603 bp Feature: domain Description: Flavoprotein Location: 3820097-3820568 bp Feature: domain Description: Flavoprotein Location: 3820097-3820568 bp Feature: gene Location: 4256949-4264049 bp Feature: domain Description: PksD Location: 4257042-4262685 bp Feature: domain Description: PksD Location: 4257042-4262685 bp Feature: domain Description: DAP2 Location: 4263159-4264035 bp Feature: domain Description: DAP2 Location: 42631 59-4264035 bp Feature: gene Location: 4264046-4265599 bp Feature: domain Description: CzcO Location: 4264055-4265375 bp Feature: domain Description: CzcO Location: 4264055-4265375 bp Feature: gene Location: 4265744-4265944 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4265786-4265930 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4265786-4265930 bp Feature: gene Location: 4266367-4266693 bp Feature: gene Location: 4267058-4268149 bp Feature: domain Description: xerC Location: 4267241-4267361 bp Feature: domain Description: xerC Location: 4267241 -4267361 bp Feature: domain Description: xerC Location: 4267526-4268102 bp Feature: domain Description: xerC Location: 4267526-42681 02 bp Feature: gene Location: 4710342-4711871 bp Feature: domain Description: DUF2397 Location: 4710384-4711839 bp Feature: domain Description: DUF2397 Location: 471 0384-471 1 839 bp Feature: gene Location: 4712248-4713573 bp Feature: domain Description: Nterm_IS4 Location: 4712263-4712539 bp Feature: domain Description: Nterm_IS4 Location: 471 2263-471 2539 bp Feature: domain Description: DDE_Tnp_1 Location: 4712599-4713238 bp Feature: domain Description: DDE_Tnp_1 Location: 471 2599-471 3238 bp Feature: gene Location: 4714154-4715434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4714388-4715048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 4388-471 5048 bp Feature: domain Description: GIIM Note: maturase Location: 4715129-4715360 bp Feature: domain Description: GIIM Note: maturase Location: 471 51 29-471 5360 bp Feature: gene Location: 4715574-4715894 bp Feature: domain Description: InsE Location: 4715577-4715862 bp Feature: domain Description: InsE Location: 471 5577-471 5862 bp Feature: gene Location: 4716903-4718204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4717191-4717812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 71 91 -471 781 2 bp Feature: domain Description: GIIM Note: maturase Location: 4717890-4718100 bp Feature: domain Description: GIIM Note: maturase Location: 471 7890-471 81 00 bp Feature: gene Location: 4718366-4719646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4718603-4719260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 8603-471 9260 bp Feature: domain Description: GIIM Note: maturase Location: 4719338-4719554 bp Feature: domain Description: GIIM Note: maturase Location: 471 9338-471 9554 bp Feature: gene Location: 4719771-4720511 bp Feature: domain Description: PHA02517 Location: 4719879-4720497 bp Feature: domain Description: PHA0251 7 Location: 471 9879-4720497 bp Feature: gene Location: 4720597-4721679 bp Feature: domain Description: xerC Location: 4720681-4721002 bp Feature: domain Description: xerC Location: 4720681 -4721 002 bp Feature: domain Description: xerC Location: 4721107-4721656 bp Feature: domain Description: xerC Location: 4721 1 07-4721 656 bp Feature: gene Location: 5265166-5265330 bp Feature: gene Location: 5265715-5266638 bp Feature: domain Description: Transposase_mut Location: 5265772-5266582 bp Feature: domain Description: Transposase_mut Location: 5265772-5266582 bp Feature: gene Location: 5267285-5269060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5267546-5268341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5267546-5268341 bp Feature: domain Description: Intron_maturas2 Location: 5268443-5268671 bp Feature: domain Description: Intron_maturas2 Location: 5268443-5268671 bp Feature: gene Location: 5269855-5270568 bp Feature: domain Description: PHA02517 Location: 5269930-5270563 bp Feature: domain Description: PHA0251 7 Location: 5269930-5270563 bp Feature: gene Location: 5270565-5270882 bp Feature: domain Description: InsE Location: 5270574-5270853 bp Feature: domain Description: InsE Location: 5270574-5270853 bp Feature: gene Location: 5281951-5283207 bp Feature: domain Description: DDE_5 Location: 5282011-5282821 bp Feature: domain Description: DDE_5 Location: 528201 1 -5282821 bp Feature: gene Location: 5283282-5284040 bp Feature: domain Description: DDE_3 Location: 5283543-5283897 bp Feature: domain Description: DDE_3 Location: 5283543-5283897 bp Feature: gene Location: 5283952-5285463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5284276-5284963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5284276-5284963 bp Feature: domain Description: GIIM Note: maturase Location: 5285038-5285266 bp Feature: domain Description: GIIM Note: maturase Location: 5285038-5285266 bp Feature: gene Location: 5286006-5286635 bp Feature: domain Description: HTH_32 Location: 5286189-5286426 bp Feature: domain Description: HTH_32 Location: 52861 89-5286426 bp Feature: gene Location: 5287454-5291464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), PBP2_TAXI_TRAP_like_1 (cd13569), RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546), COG3293 (Transposase ), YigB (COG1011), RVT-CRISPR, Flavoprotein (pfam02441), PksD (COG3321)
DAP2 (COG1506), CzcO (COG2072), xerC (PRK01287), DUF2397 (pfam09660), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Transposase_mut (pfam00872), Intron_maturas2 (pfam01348)
DDE_3 (pfam13358), HTH_32 (pfam13565)

Seq: JACHIW010000002.1 Saccharopolyspora phatthalungensis strain DSM 45584 Ga0436922_02, whole genome shotgun sequence (2131380 bp)
Overview 1 RT 1: 1532936-1546642 bp 2 RT 2: 1616288-1629730 bp 3 RT 3: 1942797-1947544 bp Neighborhood of RT #1 [1532936, 1546642] Peptidase_C25 Peptidase_C25 RVT-GII GIIM DDE_5 Neighborhood of RT #2 [1616288, 1629730] DUF664 WbqC RVT-CRISPR-like LmbE GT4_PimA-like pola DDE_5 RVT-GII GIIM RVT-GII GIIM Tra5 Neighborhood of RT #3 [1942797, 1948662] CoxM CoxS RVT-GII GIIM HTH_31 MLTR_LBD HipB Feature: gene Location: 1532936-1533172 bp Feature: gene Location: 1533179-1534693 bp Feature: domain Description: Peptidase_C25 Location: 1533260-1533635 bp Feature: domain Description: Peptidase_C2 5 Location: 15332 60-1533635 bp Feature: domain Description: Peptidase_C25 Location: 1533980-1534307 bp Feature: domain Description: Peptidase_C2 5 Location: 1533980-1534307 bp Feature: gene Location: 1534813-1536174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1535149-1535788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1535149-1535788 bp Feature: domain Description: GIIM Note: maturase Location: 1535869-1536091 bp Feature: domain Description: GIIM Note: maturase Location: 1535869-1536091 bp Feature: gene Location: 1536771-1538213 bp Feature: domain Description: DDE_5 Location: 1536846-1537632 bp Feature: domain Description: DDE_5 Location: 1536846-1537632 bp Feature: gene Location: 1538771-1546642 bp Feature: gene Location: 1616288-1616443 bp Feature: domain Description: DUF664 Location: 1616321-1616429 bp Feature: domain Description: DUF664 Location: 161632 1-161642 9 bp Feature: gene Location: 1616969-1617112 bp Feature: gene Location: 1617173-1618306 bp Feature: domain Description: WbqC Location: 1617188-1617623 bp Feature: domain Description: WbqC Location: 1617188-161762 3 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1617956-1618247 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1617956-16182 47 bp Feature: gene Location: 1618578-1619282 bp Feature: domain Description: LmbE Location: 1618599-1619199 bp Feature: domain Description: LmbE Location: 1618599-1619199 bp Feature: gene Location: 1619282-1620322 bp Feature: domain Description: GT4_PimA-like Location: 1619552-1620293 bp Feature: domain Description: GT4_PimA-like Location: 1619552 -162 02 93 bp Feature: gene Location: 1622102-1622824 bp Feature: domain Description: pola Location: 1622108-1622750 bp Feature: domain Description: pola Location: 162 2 108-162 2 750 bp Feature: gene Location: 1623029-1624285 bp Feature: domain Description: DDE_5 Location: 1623089-1623899 bp Feature: domain Description: DDE_5 Location: 162 3089-162 3899 bp Feature: gene Location: 1624486-1625730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1624702-1625353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 4702 -162 5353 bp Feature: domain Description: GIIM Note: maturase Location: 1625437-1625656 bp Feature: domain Description: GIIM Note: maturase Location: 162 5437-162 5656 bp Feature: gene Location: 1625912-1627144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1626131-1626752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 6131-162 6752 bp Feature: domain Description: GIIM Note: maturase Location: 1626830-1627040 bp Feature: domain Description: GIIM Note: maturase Location: 162 6830-162 7040 bp Feature: gene Location: 1628367-1629371 bp Feature: domain Description: Tra5 Location: 1628646-1629228 bp Feature: domain Description: Tra5 Location: 162 8646-162 92 2 8 bp Feature: gene Location: 1629368-1629730 bp Feature: gene Location: 1942797-1943180 bp Feature: domain Description: CoxM Location: 1942800-1943109 bp Feature: domain Description: CoxM Location: 1942 800-1943109 bp Feature: gene Location: 1943202-1943735 bp Feature: domain Description: CoxS Location: 1943259-1943703 bp Feature: domain Description: CoxS Location: 19432 59-1943703 bp Feature: gene Location: 1943904-1945229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1944168-1944798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1944168-1944798 bp Feature: domain Description: GIIM Note: maturase Location: 1944885-1945092 bp Feature: domain Description: GIIM Note: maturase Location: 1944885-1945092 bp Feature: gene Location: 1946115-1946852 bp Feature: domain Description: HTH_31 Location: 1946118-1946262 bp Feature: domain Description: HTH_31 Location: 1946118-19462 62 bp Feature: domain Description: MLTR_LBD Location: 1946322-1946808 bp Feature: domain Description: MLTR_LBD Location: 194632 2 -1946808 bp Feature: gene Location: 1947289-1948662 bp Feature: domain Description: HipB Location: 1947358-1947544 bp Feature: domain Description: HipB Location: 1947358-1947544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C25 (pfam01364), RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546), DUF664 (pfam04978), WbqC (pfam08889), RVT-CRISPR, LmbE (COG2120), GT4_PimA-like (cd03801), pola (TIGR00593)
Tra5 (COG2801), CoxM (COG1319), CoxS (COG2080), HTH_31 (pfam13560), MLTR_LBD (pfam17765), HipB (COG1396)