myRT

myRT report for GCA_014203845.1_ASM1420384v1

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Seq: JACHJX010000001.1 Streptomyces scabiei strain SAI-025 Ga0436964_01, whole genome shotgun sequence (4490698 bp)
Overview 1 RT 1: 635186-640360 bp 2 RT 2: 3430388-3435806 bp Neighborhood of RT #1 [635186, 640371] HATPase_RsbW-like RVT-GII Intron_maturas2 LD_lanti_pre Neighborhood of RT #2 [3430388, 3435838] PP2C_2 RVT-Retrons DEDD_Tnp_IS110 COG3547 YIH1 Feature: gene Location: 635186-636178 bp Feature: gene Location: 636708-637142 bp Feature: domain Description: HATPase_RsbW-like Location: 636867-637125 bp Feature: domain Description: HATPase_RsbW-like Location: 636867-6371 25 bp Feature: gene Location: 637843-639486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 637921-638716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 637921 -63871 6 bp Feature: domain Description: Intron_maturas2 Location: 638839-639067 bp Feature: domain Description: Intron_maturas2 Location: 638839-639067 bp Feature: gene Location: 639817-640005 bp Feature: gene Location: 640192-640371 bp Feature: domain Description: LD_lanti_pre Location: 640258-640360 bp Feature: domain Description: LD_lanti_pre Location: 640258-640360 bp Feature: gene Location: 3430388-3431194 bp Feature: domain Description: PP2C_2 Location: 3430442-3431069 bp Feature: domain Description: PP2C_2 Location: 3430442-3431 069 bp Feature: gene Location: 3432190-3433143 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3432310-3432856 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 343231 0-3432856 bp Feature: gene Location: 3433359-3434648 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3433416-3433887 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 343341 6-3433887 bp Feature: domain Description: COG3547 Location: 3434001-3434391 bp Feature: domain Description: COG3547 Location: 3434001 -3434391 bp Feature: gene Location: 3435212-3435838 bp Feature: domain Description: YIH1 Location: 3435218-3435806 bp Feature: domain Description: YIH1 Location: 343521 8-3435806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_RsbW-like (cd16936), RVT-GII, Intron_maturas2 (pfam01348), LD_lanti_pre (TIGR04363), PP2C_2 (pfam13672), RVT-Retrons, DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), YIH1 (COG1739)

Seq: JACHJX010000002.1 Streptomyces scabiei strain SAI-025 Ga0436964_02, whole genome shotgun sequence (3545609 bp)
Overview 1 RT 1: 1542581-1549884 bp Neighborhood of RT #1 [1542581, 1550000] FhlA SpoIIE HATPase_RsbW-like RVT-GII Intron_maturas2 PaaX Feature: gene Location: 1542581-1543651 bp Feature: gene Location: 1543759-1546188 bp Feature: domain Description: FhlA Location: 1544707-1544953 bp Feature: domain Description: FhlA Location: 1544707-1544953 bp Feature: domain Description: SpoIIE Location: 1545034-1545808 bp Feature: domain Description: SpoIIE Location: 1545034-1545808 bp Feature: domain Description: HATPase_RsbW-like Location: 1545940-1546177 bp Feature: domain Description: HATPase_RsbW-like Location: 1545940-1546177 bp Feature: gene Location: 1546889-1548532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1546967-1547762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1546967-1547762 bp Feature: domain Description: Intron_maturas2 Location: 1547885-1548113 bp Feature: domain Description: Intron_maturas2 Location: 1547885-1548113 bp Feature: gene Location: 1548586-1549224 bp Feature: gene Location: 1549029-1550000 bp Feature: domain Description: PaaX Location: 1549101-1549884 bp Feature: domain Description: PaaX Location: 1549101-1549884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FhlA (COG3604), SpoIIE (pfam07228), HATPase_RsbW-like (cd16936), RVT-GII, Intron_maturas2 (pfam01348), PaaX (pfam07848)

Seq: JACHJX010000003.1 Streptomyces scabiei strain SAI-025 Ga0436964_03, whole genome shotgun sequence (1635898 bp)
Overview 1 RT 1: 564043-570769 bp 2 RT 2: 1239700-1244089 bp Neighborhood of RT #1 [564043, 571386] Imm49 RVT-GII Intron_maturas2 HATPase_RsbW-like HTH_31 Neighborhood of RT #2 [1239700, 1244811] DUF4232 RVT-GII Intron_maturas2 HATPase_RsbW-like HTH_31 Feature: gene Location: 564043-566568 bp Feature: gene Location: 566595-567425 bp Feature: domain Description: Imm49 Location: 566739-567390 bp Feature: domain Description: Imm49 Location: 56673 9-5673 90 bp Feature: gene Location: 567583-569226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 567661-568456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 567661-568456 bp Feature: domain Description: Intron_maturas2 Location: 568579-568807 bp Feature: domain Description: Intron_maturas2 Location: 568579-568807 bp Feature: gene Location: 569927-570217 bp Feature: domain Description: HATPase_RsbW-like Location: 569939-570206 bp Feature: domain Description: HATPase_RsbW-like Location: 56993 9-570206 bp Feature: gene Location: 570553-571386 bp Feature: domain Description: HTH_31 Location: 570616-570769 bp Feature: domain Description: HTH_3 1 Location: 570616-570769 bp Feature: gene Location: 1239700-1240071 bp Feature: gene Location: 1240139-1240675 bp Feature: domain Description: DUF4232 Location: 1240244-1240613 bp Feature: domain Description: DUF423 2 Location: 1240244-1240613 bp Feature: gene Location: 1240930-1242573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1241008-1241803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1241008-1241803 bp Feature: domain Description: Intron_maturas2 Location: 1241926-1242154 bp Feature: domain Description: Intron_maturas2 Location: 1241926-1242154 bp Feature: gene Location: 1243274-1243717 bp Feature: domain Description: HATPase_RsbW-like Location: 1243436-1243706 bp Feature: domain Description: HATPase_RsbW-like Location: 1243 43 6-1243 706 bp Feature: gene Location: 1243894-1244811 bp Feature: domain Description: HTH_31 Location: 1243909-1244089 bp Feature: domain Description: HTH_3 1 Location: 1243 909-1244089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Imm49 (pfam15575), RVT-GII, Intron_maturas2 (pfam01348), HATPase_RsbW-like (cd16936), HTH_31 (pfam13560), DUF4232 (pfam14016)