myRT

myRT report for GCA_014204035.1_ASM1420403v1

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Seq: JACHKI010000012.1 Pseudomonas rhodesiae strain S00002 Ga0436261_12, whole genome shotgun sequence (176787 bp)
Overview 1 RT 1: 110750-114610 bp Neighborhood of RT #1 [110750, 114618] RVT_N RVT-GII GIIM HNH tig clpP Feature: gene Location: 110750-112453 bp Feature: RT Description: RVT_N Location: 110807-111047 bp Feature: RT Description: RVT_N Location: 1 1 0807-1 1 1 047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111095-111731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 095-1 1 1 731 bp Feature: domain Description: GIIM Note: maturase Location: 111782-112016 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 782-1 1 201 6 bp Feature: domain Description: HNH Note: nucleases Location: 112268-112406 bp Feature: domain Description: HNH Note: nucleases Location: 1 1 2268-1 1 2406 bp Feature: gene Location: 112581-113891 bp Feature: domain Description: tig Location: 112584-113862 bp Feature: domain Description: tig Location: 1 1 2584-1 1 3862 bp Feature: gene Location: 113983-114618 bp Feature: domain Description: clpP Location: 114037-114610 bp Feature: domain Description: clpP Location: 1 1 4037-1 1 461 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), tig (TIGR00115), clpP

Seq: JACHKI010000013.1 Pseudomonas rhodesiae strain S00002 Ga0436261_13, whole genome shotgun sequence (170797 bp)
Overview 1 RT 1: 141198-146449 bp Neighborhood of RT #1 [141198, 146469] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C ACR3 Feature: gene Location: 141198-141533 bp Feature: domain Description: TnpB_IS66 Location: 141216-141504 bp Feature: domain Description: TnpB_IS66 Location: 1412 16-141504 bp Feature: gene Location: 141595-142923 bp Feature: domain Description: LZ_Tnp_IS66 Location: 141727-141934 bp Feature: domain Description: LZ_Tnp_IS66 Location: 14172 7-141934 bp Feature: domain Description: zf-IS66 Location: 141973-142087 bp Feature: domain Description: zf-IS66 Location: 141973-142 087 bp Feature: domain Description: DDE_Tnp_IS66 Location: 142129-142903 bp Feature: domain Description: DDE_Tnp_IS66 Location: 142 12 9-142 903 bp Feature: gene Location: 143481-145142 bp Feature: RT Description: RVT_N Location: 143526-143769 bp Feature: RT Description: RVT_N Location: 14352 6-143769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143814-144450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143814-144450 bp Feature: domain Description: GIIM Note: maturase Location: 144507-144735 bp Feature: domain Description: GIIM Note: maturase Location: 144507-144735 bp Feature: gene Location: 145334-145468 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 145340-145451 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 145340-145451 bp Feature: gene Location: 145507-146469 bp Feature: domain Description: ACR3 Location: 145522-146449 bp Feature: domain Description: ACR3 Location: 14552 2 -146449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ACR3 (COG0798)

Seq: JACHKI010000015.1 Pseudomonas rhodesiae strain S00002 Ga0436261_15, whole genome shotgun sequence (152344 bp)
Overview 1 RT 1: 119838-127041 bp Neighborhood of RT #1 [119838, 127061] Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Feature: gene Location: 119838-121016 bp Feature: domain Description: Porin_O_P Location: 120063-120900 bp Feature: domain Description: Porin_O_P Location: 120063 -120900 bp Feature: gene Location: 121197-121676 bp Feature: gene Location: 121681-122889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121873-122488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121873 -122488 bp Feature: domain Description: GIIM Note: maturase Location: 122542-122770 bp Feature: domain Description: GIIM Note: maturase Location: 122542-122770 bp Feature: gene Location: 123190-124935 bp Feature: domain Description: Hydantoinase_B Location: 123205-124789 bp Feature: domain Description: Hydantoinase_B Location: 123 205-124789 bp Feature: gene Location: 124971-127061 bp Feature: domain Description: HyuA Location: 124986-127041 bp Feature: domain Description: HyuA Location: 124986-127041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Porin_O_P (pfam07396), RVT-GII, GIIM (pfam08388), Hydantoinase_B (pfam02538), HyuA (COG0145)

Seq: JACHKI010000042.1 Pseudomonas rhodesiae strain S00002 Ga0436261_42, whole genome shotgun sequence (8721 bp)
Overview 1 RT 1: 3713-8392 bp Neighborhood of RT #1 [3713, 8392] ABC_phnC IS5 RVT-GII GIIM IS5 Feature: gene Location: 3713-4540 bp Feature: domain Description: ABC_phnC Location: 3743-4457 bp Feature: domain Description: ABC_phnC Location: 374 3-4 4 57 bp Feature: gene Location: 5002-5541 bp Feature: domain Description: IS5 Location: 5191-5518 bp Feature: domain Description: IS5 Location: 5191-5518 bp Feature: gene Location: 6034-7302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6247-6904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 624 7-6904 bp Feature: domain Description: GIIM Note: maturase Location: 6982-7204 bp Feature: domain Description: GIIM Note: maturase Location: 6982-7204 bp Feature: gene Location: 7374-7832 bp Feature: domain Description: IS5 Location: 7377-7806 bp Feature: domain Description: IS5 Location: 7377-7806 bp Feature: gene Location: 8021-8392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), IS5 (COG3039), RVT-GII, GIIM (pfam08388)