myRT

myRT report for GCA_014204425.1_ASM1420442v1

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Seq: JACHLG010000016.1 Pseudomonas aeruginosa strain S00161 Ga0436321_16, whole genome shotgun sequence (136872 bp)
Overview 1 RT 1: 19825-25093 bp 2 RT 2: 76828-85003 bp Neighborhood of RT #1 [19825, 25224] FACL_FadD13-like RVT-UG17 SLATT_5 INT_Rci_Hp1_C Neighborhood of RT #2 [76828, 85017] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 19825-21372 bp Feature: domain Description: FACL_FadD13-like Location: 19852-21322 bp Feature: domain Description: FACL_FadD1 3-like Location: 1 9852-21 322 bp Feature: gene Location: 21687-21908 bp Feature: gene Location: 21981-23345 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 22209-22812 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 22209-2281 2 bp Feature: gene Location: 23345-23884 bp Feature: domain Description: SLATT_5 Location: 23351-23849 bp Feature: domain Description: SLATT_5 Location: 23351 -23849 bp Feature: gene Location: 24355-25224 bp Feature: domain Description: INT_Rci_Hp1_C Location: 24634-25093 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 24634-25093 bp Feature: gene Location: 76828-78042 bp Feature: domain Description: PRK10770 Location: 76840-78034 bp Feature: domain Description: PRK1 0770 Location: 76840-78034 bp Feature: gene Location: 78101-80884 bp Feature: domain Description: LptD Location: 78296-80870 bp Feature: domain Description: LptD Location: 78296-80870 bp Feature: gene Location: 81017-82729 bp Feature: domain Description: RVT_N Location: 81074-81317 bp Feature: domain Description: RVT_N Location: 81 074-81 31 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81362-81995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 362-81 995 bp Feature: domain Description: YkfC Location: 82208-82358 bp Feature: domain Description: YkfC Location: 82208-82358 bp Feature: domain Description: HNH Note: nucleases Location: 82535-82673 bp Feature: domain Description: HNH Note: nucleases Location: 82535-82673 bp Feature: gene Location: 83570-83704 bp Feature: gene Location: 84001-85017 bp Feature: domain Description: COG3178 Location: 84004-85003 bp Feature: domain Description: COG31 78 Location: 84004-85003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FACL_FadD13-like (cd17631), RVT-UG17, SLATT_5 (pfam18160), INT_Rci_Hp1_C (cd00796), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)
COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: JACHLG010000019.1 Pseudomonas aeruginosa strain S00161 Ga0436321_19, whole genome shotgun sequence (109242 bp)
Overview 1 RT 1: 53531-58655 bp Neighborhood of RT #1 [53531, 58663] RpmB rpmG RVT-GII YkfC HNHc COG3450 PRK13360 Feature: gene Location: 53531-53767 bp Feature: domain Description: RpmB Location: 53534-53756 bp Feature: domain Description: RpmB Location: 53534-53756 bp Feature: gene Location: 53779-53934 bp Feature: domain Description: rpmG Location: 53782-53926 bp Feature: domain Description: rpmG Location: 53782 -5392 6 bp Feature: gene Location: 55398-56702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55401-55977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55401-55977 bp Feature: domain Description: YkfC Location: 56199-56343 bp Feature: domain Description: YkfC Location: 56199-56343 bp Feature: domain Description: HNHc Note: nucleases Location: 56472-56646 bp Feature: domain Description: HNHc Note: nucleases Location: 56472 -56646 bp Feature: gene Location: 56906-57268 bp Feature: domain Description: COG3450 Location: 56909-57254 bp Feature: domain Description: COG3450 Location: 56909-572 54 bp Feature: gene Location: 57335-58663 bp Feature: domain Description: PRK13360 Location: 57341-58655 bp Feature: domain Description: PRK13360 Location: 57341-58655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpmB (COG0227), rpmG (PRK00595), RVT-GII, YkfC (COG3344), HNHc (smart00507), COG3450 (Predicted enzyme of the cupin superfamily ), PRK13360 (omega amino acid--pyruvate transaminase; Provisional)