myRT

myRT report for GCA_014204645.1_ASM1420464v1

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Seq: JACHLV010000001.1 Pseudomonas oleovorans strain B9D3D Ga0416739_01, whole genome shotgun sequence (4822341 bp)
Overview 1 RT 1: 338100-343145 bp 2 RT 2: 349855-355756 bp 3 RT 3: 962736-966745 bp 4 RT 4: 1276902-1287558 bp 5 RT 5: 1667783-1674896 bp 6 RT 6: 2337130-2342088 bp 7 RT 7: 2390882-2398229 bp 8 RT 8: 2978395-2983054 bp 9 RT 9: 3007898-3013783 bp 10 RT 10: 3080981-3083505 bp 11 RT 11: 3634089-3638099 bp 12 RT 12: 4028246-4034088 bp 13 RT 13: 4065805-4074244 bp Neighborhood of RT #1 [338100, 343150] PRK01712 RVT-GII GIIM DUF4124 SmpA_OmlA MgtE Neighborhood of RT #2 [349855, 355842] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII GIIM Arc PRK09984 Neighborhood of RT #3 [962736, 966745] GIIM RVT-GII IstB_IS21_ATP IstB_IS21 Neighborhood of RT #4 [1276902, 1287587] recB recC RVT-GII GIIM Arm-DNA-bind_3 INT_P4_C Neighborhood of RT #5 [1667783, 1674901] mutS1 PreA DUF3470 RVT-GII GIIM PRK05657 Neighborhood of RT #6 [2337130, 2342117] yjbJ OsmY RVT-GII GIIM polynuc_phos Neighborhood of RT #7 [2390882, 2398243] CHASE sensory_box PAS_4 TMAO_torS TMAO_torS TMAO_torS GIIM RVT-GII PRK10510 PRK10510 Neighborhood of RT #8 [2978395, 2983269] hisH hisB RVT-GII GIIM MFS_OFA_like Neighborhood of RT #9 [3007898, 3013812] OprD PAS_3 GGDEF RVT-GII GIIM OLE1 DDE_Tnp_ISL3 Neighborhood of RT #10 [3080981, 3083513] RVT-GII GIIM rpmG Neighborhood of RT #11 [3634089, 3638113] RVT-GII GIIM PRK10748 XerC Neighborhood of RT #12 [4028246, 4034099] type_I_sec_TolC RVT-GII GIIM PRK05749 LysR Neighborhood of RT #13 [4065805, 4074330] PRK01117 RVT-GII GIIM Tar PRK11642 Feature: gene Location: 338100-338285 bp Feature: domain Description: PRK01712 Location: 338103-338268 bp Feature: domain Description: PRK01 71 2 Location: 3381 03-338268 bp Feature: gene Location: 339110-339352 bp Feature: gene Location: 339444-340796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339759-340377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339759-340377 bp Feature: domain Description: GIIM Note: maturase Location: 340434-340644 bp Feature: domain Description: GIIM Note: maturase Location: 340434-340644 bp Feature: gene Location: 340890-341384 bp Feature: domain Description: DUF4124 Location: 340947-341043 bp Feature: domain Description: DUF41 24 Location: 340947-341 043 bp Feature: domain Description: SmpA_OmlA Location: 341220-341379 bp Feature: domain Description: SmpA_OmlA Location: 341 220-341 379 bp Feature: gene Location: 341708-343150 bp Feature: domain Description: MgtE Location: 341831-343145 bp Feature: domain Description: MgtE Location: 341 831 -3431 45 bp Feature: gene Location: 349855-351384 bp Feature: domain Description: COG4584 Location: 349948-350758 bp Feature: domain Description: COG4584 Location: 349948-350758 bp Feature: domain Description: COG4584 Location: 350791-351259 bp Feature: domain Description: COG4584 Location: 350791 -351 259 bp Feature: gene Location: 351402-352157 bp Feature: domain Description: IstB_IS21_ATP Location: 351474-351558 bp Feature: domain Description: IstB_IS21 _ATP Location: 351 474-351 558 bp Feature: domain Description: IstB_IS21 Location: 351561-352089 bp Feature: domain Description: IstB_IS21 Location: 351 561 -352089 bp Feature: gene Location: 352905-354230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353166-353781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3531 66-353781 bp Feature: domain Description: GIIM Note: maturase Location: 353835-354063 bp Feature: domain Description: GIIM Note: maturase Location: 353835-354063 bp Feature: gene Location: 354308-354625 bp Feature: domain Description: Arc Location: 354332-354479 bp Feature: domain Description: Arc Location: 354332-354479 bp Feature: gene Location: 355018-355842 bp Feature: domain Description: PRK09984 Location: 355021-355756 bp Feature: domain Description: PRK09984 Location: 355021 -355756 bp Feature: gene Location: 962736-962864 bp Feature: gene Location: 962957-963301 bp Feature: domain Description: GIIM Note: maturase Location: 962963-963134 bp Feature: domain Description: GIIM Note: maturase Location: 962963-9631 34 bp Feature: gene Location: 963277-964377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963634-964249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963634-964249 bp Feature: gene Location: 965251-966000 bp Feature: domain Description: IstB_IS21_ATP Location: 965323-965401 bp Feature: domain Description: IstB_IS21 _ATP Location: 965323-965401 bp Feature: domain Description: IstB_IS21 Location: 965413-965941 bp Feature: domain Description: IstB_IS21 Location: 96541 3-965941 bp Feature: gene Location: 965984-966745 bp Feature: gene Location: 1276902-1280531 bp Feature: domain Description: recB Location: 1276929-1280502 bp Feature: domain Description: recB Location: 1 276929-1 280502 bp Feature: gene Location: 1280528-1283941 bp Feature: domain Description: recC Location: 1280564-1283795 bp Feature: domain Description: recC Location: 1 280564-1 283795 bp Feature: gene Location: 1284141-1285418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1284402-1284999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 284402-1 284999 bp Feature: domain Description: GIIM Note: maturase Location: 1285056-1285266 bp Feature: domain Description: GIIM Note: maturase Location: 1 285056-1 285266 bp Feature: gene Location: 1285354-1285833 bp Feature: gene Location: 1286235-1287587 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1286250-1286526 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 286250-1 286526 bp Feature: domain Description: INT_P4_C Location: 1286967-1287558 bp Feature: domain Description: INT_P4_C Location: 1 286967-1 287558 bp Feature: gene Location: 1667783-1670350 bp Feature: domain Description: mutS1 Location: 1667804-1670342 bp Feature: domain Description: mutS1 Location: 1 667804-1 670342 bp Feature: gene Location: 1670490-1670813 bp Feature: domain Description: PreA Location: 1670502-1670682 bp Feature: domain Description: PreA Location: 1 670502-1 670682 bp Feature: domain Description: DUF3470 Location: 1670688-1670811 bp Feature: domain Description: DUF3470 Location: 1 670688-1 67081 1 bp Feature: gene Location: 1671997-1673322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1672258-1672873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 672258-1 672873 bp Feature: domain Description: GIIM Note: maturase Location: 1672927-1673155 bp Feature: domain Description: GIIM Note: maturase Location: 1 672927-1 6731 55 bp Feature: gene Location: 1673258-1673737 bp Feature: gene Location: 1673894-1674901 bp Feature: domain Description: PRK05657 Location: 1674014-1674896 bp Feature: domain Description: PRK05657 Location: 1 67401 4-1 674896 bp Feature: gene Location: 2337130-2337333 bp Feature: domain Description: yjbJ Location: 2337133-2337328 bp Feature: domain Description: yjbJ Location: 23371 33-2337328 bp Feature: gene Location: 2337386-2337739 bp Feature: domain Description: OsmY Location: 2337431-2337719 bp Feature: domain Description: OsmY Location: 2337431 -233771 9 bp Feature: gene Location: 2338108-2339433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2338369-2338984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2338369-2338984 bp Feature: domain Description: GIIM Note: maturase Location: 2339038-2339266 bp Feature: domain Description: GIIM Note: maturase Location: 2339038-2339266 bp Feature: gene Location: 2339369-2339848 bp Feature: gene Location: 2340012-2342117 bp Feature: domain Description: polynuc_phos Location: 2340039-2342088 bp Feature: domain Description: polynuc_phos Location: 2340039-2342088 bp Feature: gene Location: 2390882-2394640 bp Feature: domain Description: CHASE Location: 2391173-2391728 bp Feature: domain Description: CHASE Location: 2391 1 73-2391 728 bp Feature: domain Description: sensory_box Location: 2391989-2392322 bp Feature: domain Description: sensory_box Location: 2391 989-2392322 bp Feature: domain Description: PAS_4 Location: 2392337-2392670 bp Feature: domain Description: PAS_4 Location: 2392337-2392670 bp Feature: domain Description: TMAO_torS Location: 2392679-2393720 bp Feature: domain Description: TMAO_torS Location: 2392679-2393720 bp Feature: domain Description: TMAO_torS Location: 2393819-2394056 bp Feature: domain Description: TMAO_torS Location: 239381 9-2394056 bp Feature: domain Description: TMAO_torS Location: 2394218-2394599 bp Feature: domain Description: TMAO_torS Location: 239421 8-2394599 bp Feature: gene Location: 2394869-2395276 bp Feature: domain Description: GIIM Note: maturase Location: 2394881-2395109 bp Feature: domain Description: GIIM Note: maturase Location: 2394881 -23951 09 bp Feature: gene Location: 2395334-2396200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2395595-2396186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2395595-23961 86 bp Feature: gene Location: 2396774-2397430 bp Feature: domain Description: PRK10510 Location: 2396777-2397428 bp Feature: domain Description: PRK1 051 0 Location: 2396777-2397428 bp Feature: gene Location: 2397575-2398243 bp Feature: domain Description: PRK10510 Location: 2397593-2398229 bp Feature: domain Description: PRK1 051 0 Location: 2397593-2398229 bp Feature: gene Location: 2978395-2979033 bp Feature: domain Description: hisH Location: 2978398-2979022 bp Feature: domain Description: hisH Location: 2978398-2979022 bp Feature: gene Location: 2979034-2979639 bp Feature: domain Description: hisB Location: 2979055-2979637 bp Feature: domain Description: hisB Location: 2979055-2979637 bp Feature: gene Location: 2979806-2981173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2980136-2980754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29801 36-2980754 bp Feature: domain Description: GIIM Note: maturase Location: 2980811-2981021 bp Feature: domain Description: GIIM Note: maturase Location: 298081 1 -2981 021 bp Feature: gene Location: 2981265-2981765 bp Feature: gene Location: 2981611-2983269 bp Feature: domain Description: MFS_OFA_like Location: 2981698-2983054 bp Feature: domain Description: MFS_OFA_like Location: 2981 698-2983054 bp Feature: gene Location: 3007898-3009217 bp Feature: domain Description: OprD Location: 3007967-3009209 bp Feature: domain Description: OprD Location: 3007967-3009209 bp Feature: gene Location: 3009642-3010625 bp Feature: domain Description: PAS_3 Location: 3009825-3010044 bp Feature: domain Description: PAS_3 Location: 3009825-301 0044 bp Feature: domain Description: GGDEF Location: 3010095-3010617 bp Feature: domain Description: GGDEF Location: 301 0095-301 061 7 bp Feature: gene Location: 3010762-3012129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3011092-3011710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 1 092-301 1 71 0 bp Feature: domain Description: GIIM Note: maturase Location: 3011767-3011977 bp Feature: domain Description: GIIM Note: maturase Location: 301 1 767-301 1 977 bp Feature: gene Location: 3012221-3012463 bp Feature: gene Location: 3012562-3013812 bp Feature: domain Description: OLE1 Location: 3012649-3013387 bp Feature: domain Description: OLE1 Location: 301 2649-301 3387 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3013435-3013783 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 301 3435-301 3783 bp Feature: gene Location: 3080981-3081205 bp Feature: gene Location: 3081320-3081448 bp Feature: gene Location: 3081455-3082780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3081716-3082331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3081 71 6-3082331 bp Feature: domain Description: GIIM Note: maturase Location: 3082385-3082613 bp Feature: domain Description: GIIM Note: maturase Location: 3082385-308261 3 bp Feature: gene Location: 3082716-3083195 bp Feature: gene Location: 3083358-3083513 bp Feature: domain Description: rpmG Location: 3083361-3083505 bp Feature: domain Description: rpmG Location: 3083361 -3083505 bp Feature: gene Location: 3634089-3634412 bp Feature: gene Location: 3634570-3635049 bp Feature: gene Location: 3634985-3636310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635246-3635861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635246-3635861 bp Feature: domain Description: GIIM Note: maturase Location: 3635915-3636143 bp Feature: domain Description: GIIM Note: maturase Location: 363591 5-36361 43 bp Feature: gene Location: 3636513-3637214 bp Feature: domain Description: PRK10748 Location: 3636522-3637197 bp Feature: domain Description: PRK1 0748 Location: 3636522-36371 97 bp Feature: gene Location: 3637211-3638113 bp Feature: domain Description: XerC Location: 3637220-3638099 bp Feature: domain Description: XerC Location: 3637220-3638099 bp Feature: gene Location: 4028246-4028440 bp Feature: gene Location: 4028615-4030057 bp Feature: domain Description: type_I_sec_TolC Location: 4028702-4029968 bp Feature: domain Description: type_I_sec_TolC Location: 4028702-4029968 bp Feature: gene Location: 4030680-4031531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4030776-4031082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4030776-4031 082 bp Feature: domain Description: GIIM Note: maturase Location: 4031136-4031364 bp Feature: domain Description: GIIM Note: maturase Location: 4031 1 36-4031 364 bp Feature: gene Location: 4031744-4033009 bp Feature: domain Description: PRK05749 Location: 4031747-4033004 bp Feature: domain Description: PRK05749 Location: 4031 747-4033004 bp Feature: gene Location: 4033212-4034099 bp Feature: domain Description: LysR Location: 4033224-4034088 bp Feature: domain Description: LysR Location: 4033224-4034088 bp Feature: gene Location: 4065805-4067100 bp Feature: domain Description: PRK01117 Location: 4065814-4067095 bp Feature: domain Description: PRK01 1 1 7 Location: 406581 4-4067095 bp Feature: gene Location: 4067263-4067742 bp Feature: gene Location: 4067678-4069003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4067939-4068554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4067939-4068554 bp Feature: domain Description: GIIM Note: maturase Location: 4068608-4068836 bp Feature: domain Description: GIIM Note: maturase Location: 4068608-4068836 bp Feature: gene Location: 4069184-4071118 bp Feature: domain Description: Tar Location: 4069973-4071116 bp Feature: domain Description: Tar Location: 4069973-4071 1 1 6 bp Feature: gene Location: 4071808-4074330 bp Feature: domain Description: PRK11642 Location: 4071826-4074244 bp Feature: domain Description: PRK1 1 642 Location: 4071 826-4074244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01712 (carbon storage regulator CsrA), RVT-GII, GIIM (pfam08388), DUF4124 (pfam13511), SmpA_OmlA (pfam04355), MgtE (pfam01769), COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), Arc (pfam03869)
PRK09984 (phosphonate ABC transporter ATP-binding protein), recB (TIGR00609), recC (TIGR01450), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), mutS1 (TIGR01070), PreA (COG1146), DUF3470 (pfam11953), PRK05657 (RNA polymerase sigma factor RpoS; Validated), yjbJ (COG3237)
OsmY (COG2823), polynuc_phos (TIGR03591), CHASE (smart01079), sensory_box (TIGR00229), PAS_4 (pfam08448), TMAO_torS (TIGR02956), PRK10510 (OmpA family lipoprotein), hisH (PRK14004), hisB (PRK13598), MFS_OFA_like (cd17353)
OprD (pfam03573), PAS_3 (pfam08447), GGDEF (TIGR00254), OLE1 (COG1398), DDE_Tnp_ISL3 (pfam01610), rpmG (PRK00595), PRK10748 (5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB), XerC (COG4973), type_I_sec_TolC (TIGR01844), PRK05749 (3-deoxy-D-manno-octulosonic-acid transferase; Reviewed)
LysR (COG0583), PRK01117 (adenylosuccinate synthetase; Provisional), Tar (COG0840), PRK11642 (ribonuclease R)