myRT

myRT report for GCA_014205085.1_ASM1420508v1

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Seq: JACHMV010000001.1 Actinomadura catellatispora strain DSM 44772 Ga0373993_01, whole genome shotgun sequence (8203588 bp)
Overview 1 RT 1: 271812-276417 bp 2 RT 2: 4748905-4754780 bp Neighborhood of RT #1 [271812, 276417] CRISPR_Cas2 Cas_Cas1 RVT-CRISPR ThiF Neighborhood of RT #2 [4748905, 4754780] PHA02517 HTH_Tnp_4 DDE_Tnp_4 RVT-GII GIIM Phage_int_SAM_3 INT_ICEBs1_C_like INT_ICEBs1_C_like Feature: gene Location: 271812-272093 bp Feature: domain Description: CRISPR_Cas2 Location: 271833-272034 bp Feature: domain Description: CRISPR_Cas2 Location: 271 833-272034 bp Feature: gene Location: 272098-273111 bp Feature: domain Description: Cas_Cas1 Location: 272128-272965 bp Feature: domain Description: Cas_Cas1 Location: 2721 28-272965 bp Feature: gene Location: 273113-274006 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 273353-273944 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 273353-273944 bp Feature: gene Location: 275006-275905 bp Feature: domain Description: ThiF Location: 275048-275810 bp Feature: domain Description: ThiF Location: 275048-27581 0 bp Feature: gene Location: 275893-276417 bp Feature: gene Location: 4748905-4749255 bp Feature: domain Description: PHA02517 Location: 4749085-4749238 bp Feature: domain Description: PHA0251 7 Location: 4749085-4749238 bp Feature: gene Location: 4749606-4750379 bp Feature: domain Description: HTH_Tnp_4 Location: 4749711-4749861 bp Feature: domain Description: HTH_Tnp_4 Location: 474971 1 -4749861 bp Feature: domain Description: DDE_Tnp_4 Location: 4749912-4750332 bp Feature: domain Description: DDE_Tnp_4 Location: 474991 2-4750332 bp Feature: gene Location: 4750664-4751557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4750685-4751126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4750685-4751 1 26 bp Feature: domain Description: GIIM Note: maturase Location: 4751213-4751429 bp Feature: domain Description: GIIM Note: maturase Location: 4751 21 3-4751 429 bp Feature: gene Location: 4752622-4753977 bp Feature: domain Description: Phage_int_SAM_3 Location: 4752814-4752976 bp Feature: domain Description: Phage_int_SAM_3 Location: 475281 4-4752976 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4753138-4753435 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 47531 38-4753435 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4753618-4753891 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 475361 8-4753891 bp Feature: gene Location: 4754373-4754780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas2 (pfam09827), Cas_Cas1 (pfam01867), RVT-CRISPR, ThiF (pfam00899), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), RVT-GII, GIIM (pfam08388), Phage_int_SAM_3 (pfam14659)
INT_ICEBs1_C_like (cd01189)