myRT

myRT report for GCA_014205215.1_ASM1420521v1

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Seq: JACHNC010000001.1 Actinoplanes lobatus strain DSM 43150 Ga0104563_01, whole genome shotgun sequence (10370198 bp)
Overview 1 RT 1: 2075862-2081793 bp 2 RT 2: 7246373-7252663 bp 3 RT 3: 8938921-8946010 bp 4 RT 4: 10259473-10267547 bp Neighborhood of RT #1 [2075862, 2081867] Rve RVT-GII GIIM APH COG4278 Neighborhood of RT #2 [7246373, 7252701] PhyH PRK04841 RVT-GII GIIM TPR_12 TPR_12 DinB_2 Neighborhood of RT #3 [8938921, 8946010] RVT_N RVT-GII GIIM NT_KNTase_like Neighborhood of RT #4 [10259473, 10267744] TPR TPR TPR RVT-GII GIIM KOG1803 KOG1803 KOG1803 PLDc_C_DEXD_like Feature: gene Location: 2075862-2076482 bp Feature: gene Location: 2076647-2077423 bp Feature: domain Description: Rve Location: 2076653-2077220 bp Feature: domain Description: Rve Location: 2076653-2077220 bp Feature: gene Location: 2078033-2079490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2078366-2079062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2078366-2079062 bp Feature: domain Description: GIIM Note: maturase Location: 2079131-2079353 bp Feature: domain Description: GIIM Note: maturase Location: 20791 31 -2079353 bp Feature: gene Location: 2080589-2081374 bp Feature: domain Description: APH Location: 2081033-2081213 bp Feature: domain Description: APH Location: 2081 033-2081 21 3 bp Feature: gene Location: 2081391-2081867 bp Feature: domain Description: COG4278 Location: 2081616-2081793 bp Feature: domain Description: COG4278 Location: 2081 61 6-2081 793 bp Feature: gene Location: 7246373-7247050 bp Feature: domain Description: PhyH Location: 7246529-7246958 bp Feature: domain Description: PhyH Location: 7246529-7246958 bp Feature: gene Location: 7247037-7248533 bp Feature: domain Description: PRK04841 Location: 7247904-7248159 bp Feature: domain Description: PRK04841 Location: 7247904-72481 59 bp Feature: gene Location: 7249501-7250958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7249834-7250530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7249834-7250530 bp Feature: domain Description: GIIM Note: maturase Location: 7250599-7250821 bp Feature: domain Description: GIIM Note: maturase Location: 7250599-7250821 bp Feature: gene Location: 7251104-7251754 bp Feature: domain Description: TPR_12 Location: 7251398-7251572 bp Feature: domain Description: TPR_1 2 Location: 7251 398-7251 572 bp Feature: domain Description: TPR_12 Location: 7251596-7251689 bp Feature: domain Description: TPR_1 2 Location: 7251 596-7251 689 bp Feature: gene Location: 7252135-7252701 bp Feature: domain Description: DinB_2 Location: 7252171-7252663 bp Feature: domain Description: DinB_2 Location: 72521 71 -7252663 bp Feature: gene Location: 8938921-8939472 bp Feature: gene Location: 8940597-8940929 bp Feature: gene Location: 8942161-8943915 bp Feature: RT Description: RVT_N Location: 8942236-8942479 bp Feature: RT Description: RVT_N Location: 8942236-8942479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8942533-8943187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8942533-89431 87 bp Feature: domain Description: GIIM Note: maturase Location: 8943238-8943472 bp Feature: domain Description: GIIM Note: maturase Location: 8943238-8943472 bp Feature: gene Location: 8944732-8945463 bp Feature: domain Description: NT_KNTase_like Location: 8944762-8944936 bp Feature: domain Description: NT_KNTase_like Location: 8944762-8944936 bp Feature: gene Location: 8945447-8946010 bp Feature: gene Location: 10259473-10262238 bp Feature: domain Description: TPR Location: 10260958-10261126 bp Feature: domain Description: TPR Location: 1 0260958-1 0261 1 26 bp Feature: domain Description: TPR Location: 10261159-10261576 bp Feature: domain Description: TPR Location: 1 0261 1 59-1 0261 576 bp Feature: domain Description: TPR Location: 10261627-10261990 bp Feature: domain Description: TPR Location: 1 0261 627-1 0261 990 bp Feature: gene Location: 10262389-10262523 bp Feature: gene Location: 10262610-10263848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10262787-10263444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0262787-1 0263444 bp Feature: domain Description: GIIM Note: maturase Location: 10263522-10263747 bp Feature: domain Description: GIIM Note: maturase Location: 1 0263522-1 0263747 bp Feature: gene Location: 10263858-10264115 bp Feature: gene Location: 10264280-10267744 bp Feature: domain Description: KOG1803 Location: 10264922-10265213 bp Feature: domain Description: KOG1 803 Location: 1 0264922-1 026521 3 bp Feature: domain Description: KOG1803 Location: 10266020-10266527 bp Feature: domain Description: KOG1 803 Location: 1 0266020-1 0266527 bp Feature: domain Description: KOG1803 Location: 10266671-10266971 bp Feature: domain Description: KOG1 803 Location: 1 0266671 -1 0266971 bp Feature: domain Description: PLDc_C_DEXD_like Location: 10267160-10267547 bp Feature: domain Description: PLDc_C_DEXD_like Location: 1 02671 60-1 0267547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), APH (pfam01636), COG4278 (Uncharacterized protein ), PhyH (pfam05721), PRK04841 (HTH-type transcriptional regulator MalT), TPR_12 (pfam13424), DinB_2 (pfam12867), RVT_N (pfam13655)
NT_KNTase_like (cd05403), TPR (smart00028), KOG1803 (KOG1803, DNA helicase ), PLDc_C_DEXD_like (cd09126)