myRT

myRT report for GCA_014207055.1_ASM1420705v1

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Seq: JACHBF010000022.1 Rhizobium tropici strain SEMIA 4059 Ga0394378_22, whole genome shotgun sequence (86491 bp)
Overview 1 RT 1: 28425-31552 bp Neighborhood of RT #1 [28425, 31552] COG5489 RVT_N RVT-GII GIIM Feature: gene Location: 28425-28901 bp Feature: gene Location: 29042-29350 bp Feature: domain Description: COG5489 Location: 29045-29348 bp Feature: domain Description: COG5489 Location: 29045-29348 bp Feature: gene Location: 29636-31156 bp Feature: domain Description: RVT_N Location: 29687-29915 bp Feature: domain Description: RVT_N Location: 29687-2991 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29975-30614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29975-3061 4 bp Feature: domain Description: GIIM Note: maturase Location: 30671-30899 bp Feature: domain Description: GIIM Note: maturase Location: 30671 -30899 bp Feature: gene Location: 31240-31386 bp Feature: gene Location: 31412-31552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5489 (Uncharacterized conserved protein, DUF736 family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JACHBF010000031.1 Rhizobium tropici strain SEMIA 4059 Ga0394378_31, whole genome shotgun sequence (41280 bp)
Overview 1 RT 1: 29239-34102 bp Neighborhood of RT #1 [29239, 34102] DUF4263 SLATT_5 RVT-UG17 HTH_29 rve Feature: gene Location: 29239-29526 bp Feature: domain Description: DUF4263 Location: 29245-29491 bp Feature: domain Description: DUF42 63 Location: 2 92 45-2 9491 bp Feature: gene Location: 29819-30397 bp Feature: domain Description: SLATT_5 Location: 29846-30380 bp Feature: domain Description: SLATT_5 Location: 2 9846-30380 bp Feature: gene Location: 30403-31719 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 30631-31213 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 30631-312 13 bp Feature: gene Location: 31937-33358 bp Feature: domain Description: HTH_29 Location: 31979-32162 bp Feature: domain Description: HTH_2 9 Location: 31979-32 162 bp Feature: domain Description: rve Location: 32363-32729 bp Feature: domain Description: rve Location: 32 363-32 72 9 bp Feature: gene Location: 33365-34102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4263 (pfam14082), SLATT_5 (pfam18160), RVT-UG17, HTH_29 (pfam13551), rve (pfam00665)

Seq: JACHBF010000047.1 Rhizobium tropici strain SEMIA 4059 Ga0394378_47, whole genome shotgun sequence (10759 bp)
Overview 1 RT 1: 953-5031 bp Neighborhood of RT #1 [953, 5031] AccC RVT-GII GIIM Feature: gene Location: 953-2242 bp Feature: domain Description: AccC Location: 971-2177 bp Feature: domain Description: AccC Location: 971-2177 bp Feature: gene Location: 2475-2708 bp Feature: gene Location: 2760-4010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2976-3621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2976-3 621 bp Feature: domain Description: GIIM Note: maturase Location: 3708-3918 bp Feature: domain Description: GIIM Note: maturase Location: 3 708-3 918 bp Feature: gene Location: 4227-4502 bp Feature: gene Location: 4741-5031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AccC (COG0439), RVT-GII, GIIM (pfam08388)

Seq: JACHBF010000066.1 Rhizobium tropici strain SEMIA 4059 Ga0394378_66, whole genome shotgun sequence (1784 bp)
Overview 1 RT 1: 10-1777 bp Neighborhood of RT #1 [10, 1782] RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 10-1332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-955 bp Feature: domain Description: GIIM Note: maturase Location: 1024-1237 bp Feature: domain Description: GIIM Note: maturase Location: 1024 -1237 bp Feature: gene Location: 1351-1782 bp Feature: domain Description: DDE_Tnp_1 Location: 1447-1777 bp Feature: domain Description: DDE_Tnp_1 Location: 14 4 7-1777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)