myRT

myRT report for GCA_014212455.1_ASM1421245v1

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Seq: JACKWW010000003.1 Clostridium algidicarnis strain CM003 contig00003, whole genome shotgun sequence (232874 bp)
Overview 1 RT 1: 30483-36160 bp Neighborhood of RT #1 [30483, 36210] COG4443 RVT-GII GIIM OmpR BaeS Feature: gene Location: 30483-30740 bp Feature: domain Description: COG4443 Location: 30522-30732 bp Feature: domain Description: COG4443 Location: 30522-30732 bp Feature: gene Location: 31132-31296 bp Feature: gene Location: 31828-33234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32179-32797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 79-32797 bp Feature: domain Description: GIIM Note: maturase Location: 32848-33079 bp Feature: domain Description: GIIM Note: maturase Location: 32848-33079 bp Feature: gene Location: 33489-34181 bp Feature: domain Description: OmpR Location: 33504-34176 bp Feature: domain Description: OmpR Location: 33504-341 76 bp Feature: gene Location: 34159-36210 bp Feature: domain Description: BaeS Location: 35146-36160 bp Feature: domain Description: BaeS Location: 351 46-361 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4443 (Uncharacterized protein ), RVT-GII, GIIM (pfam08388), OmpR (COG0745), BaeS (COG0642)

Seq: JACKWW010000005.1 Clostridium algidicarnis strain CM003 contig00005, whole genome shotgun sequence (207541 bp)
Overview 1 RT 1: 1680-6270 bp Neighborhood of RT #1 [1680, 6270] RVT-Retrons Trypsin_2 RVT-Retrons VanZ Feature: gene Location: 1680-1859 bp Feature: gene Location: 1929-2291 bp Feature: gene Location: 2625-3761 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2628-2862 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 62 8-2 862 bp Feature: domain Description: Trypsin_2 Location: 3252-3660 bp Feature: domain Description: Trypsin_2 Location: 32 52 -3660 bp Feature: gene Location: 3818-4276 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3980-4268 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3980-42 68 bp Feature: gene Location: 5468-5992 bp Feature: domain Description: VanZ Location: 5510-5939 bp Feature: domain Description: VanZ Location: 5510-5939 bp Feature: gene Location: 6139-6270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), VanZ (pfam04892)

Seq: JACKWW010000009.1 Clostridium algidicarnis strain CM003 contig00009, whole genome shotgun sequence (126188 bp)
Overview 1 RT 1: 28864-36969 bp Neighborhood of RT #1 [28864, 36974] dnaE RVT-GII HNHc dnaE PRK12383 Feature: gene Location: 28864-30351 bp Feature: domain Description: dnaE Location: 28867-30346 bp Feature: domain Description: dnaE Location: 28867-3 03 46 bp Feature: gene Location: 30371-30499 bp Feature: gene Location: 30528-32651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31032-31770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 103 2-3 1770 bp Feature: domain Description: HNHc Note: nucleases Location: 32349-32499 bp Feature: domain Description: HNHc Note: nucleases Location: 3 23 49-3 2499 bp Feature: gene Location: 33231-35402 bp Feature: domain Description: dnaE Location: 33315-35385 bp Feature: domain Description: dnaE Location: 3 3 3 15-3 53 85 bp Feature: gene Location: 35757-36974 bp Feature: domain Description: PRK12383 Location: 35775-36969 bp Feature: domain Description: PRK123 83 Location: 3 5775-3 6969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaE (PRK07374), RVT-GII, HNHc (smart00507), PRK12383 (putative mutase; Provisional)

Seq: JACKWW010000038.1 Clostridium algidicarnis strain CM003 contig00038, whole genome shotgun sequence (1894 bp)
Overview 1 RT 1: 518-1385 bp Neighborhood of RT #1 [518, 1432] RVT-GII Feature: gene Location: 518-1432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII