myRT

myRT report for GCA_014219065.1_ASM1421906v1

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Seq: JACLGO010000014.1 Pseudomonas xiamenensis strain PX1 NODE_14_length_105153_cov_131.211932, whole genome shotgun sequence (105153 bp)
Overview 1 RT 1: 70336-78024 bp Neighborhood of RT #1 [70336, 78119] PRK10908 PRK10416 RVT-GII YkfC HNHc PqqL PqqL Feature: gene Location: 70336-70998 bp Feature: domain Description: PRK10908 Location: 70339-70984 bp Feature: domain Description: PRK1 0908 Location: 70339-70984 bp Feature: gene Location: 71003-72241 bp Feature: domain Description: PRK10416 Location: 71117-72236 bp Feature: domain Description: PRK1 041 6 Location: 71 1 1 7-72236 bp Feature: gene Location: 72399-73757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72402-73005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72402-73005 bp Feature: domain Description: YkfC Location: 73230-73371 bp Feature: domain Description: YkfC Location: 73230-73371 bp Feature: domain Description: HNHc Note: nucleases Location: 73530-73695 bp Feature: domain Description: HNHc Note: nucleases Location: 73530-73695 bp Feature: gene Location: 75190-76551 bp Feature: domain Description: PqqL Location: 75241-76540 bp Feature: domain Description: PqqL Location: 75241 -76540 bp Feature: gene Location: 76551-78119 bp Feature: domain Description: PqqL Location: 76764-78024 bp Feature: domain Description: PqqL Location: 76764-78024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10908 (cell division ATP-binding protein FtsE), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), RVT-GII, YkfC (COG3344), HNHc (smart00507), PqqL (COG0612)

Seq: JACLGO010000032.1 Pseudomonas xiamenensis strain PX1 NODE_32_length_49782_cov_130.488925, whole genome shotgun sequence (49782 bp)
Overview 1 RT 1: 42443-45920 bp Neighborhood of RT #1 [42443, 45949] COG3177 RVT-GII GIIM rve Tra5 Feature: gene Location: 42443-43009 bp Feature: domain Description: COG3177 Location: 42446-42770 bp Feature: domain Description: COG3177 Location: 42 446-42 770 bp Feature: gene Location: 43043-43279 bp Feature: gene Location: 43413-44024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43416-43575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43416-43575 bp Feature: domain Description: GIIM Note: maturase Location: 43632-43857 bp Feature: domain Description: GIIM Note: maturase Location: 43632 -43857 bp Feature: gene Location: 44275-45078 bp Feature: domain Description: rve Location: 44440-44806 bp Feature: domain Description: rve Location: 44440-44806 bp Feature: gene Location: 45137-45949 bp Feature: domain Description: Tra5 Location: 45203-45920 bp Feature: domain Description: Tra5 Location: 452 03-4592 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT-GII, GIIM (pfam08388), rve (pfam00665), Tra5 (COG2801)

Seq: JACLGO010000062.1 Pseudomonas xiamenensis strain PX1 NODE_62_length_1380_cov_427.930161, whole genome shotgun sequence (1380 bp)
Overview 1 RT 1: 3-1372 bp Neighborhood of RT #1 [3, 1377] RVT-GII Feature: gene Location: 3-590 bp Feature: gene Location: 595-1377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-1372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-13 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII