myRT

myRT report for GCA_014222145.1_UMSL_Avar9RC_1.0

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Seq: JACKZT010000315.1 Trichormus variabilis 9RC plasmid p9RC-A NODE_237_length_2496_cov_24.0393, whole genome shotgun sequence (2496 bp)
Overview 1 RT 1: 486-2310 bp Neighborhood of RT #1 [486, 2369] RVT_N RVT-GII GIIM McrA Feature: gene Location: 486-2369 bp Feature: RT Description: RVT_N Location: 660-906 bp Feature: RT Description: RVT_N Location: 660-906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1 626 bp Feature: domain Description: GIIM Note: maturase Location: 1728-1959 bp Feature: domain Description: GIIM Note: maturase Location: 1 728-1 959 bp Feature: domain Description: McrA Location: 2043-2310 bp Feature: domain Description: McrA Location: 2043-231 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACKZT010000033.1 Trichormus variabilis 9RC NODE_36_length_54529_cov_15.1132, whole genome shotgun sequence (54529 bp)
Overview 1 RT 1: 12162-22029 bp Neighborhood of RT #1 [12162, 22029] AlbA_2 TPR TPR RVT-Retrons YprA YprA YprA Feature: gene Location: 12162-12353 bp Feature: gene Location: 12418-13482 bp Feature: domain Description: AlbA_2 Location: 12469-12898 bp Feature: domain Description: AlbA_2 Location: 12 469-12 898 bp Feature: domain Description: TPR Location: 13009-13279 bp Feature: domain Description: TPR Location: 13009-132 79 bp Feature: domain Description: TPR Location: 13333-13414 bp Feature: domain Description: TPR Location: 13333-13414 bp Feature: gene Location: 14262-14807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14265-14499 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142 65-14499 bp Feature: gene Location: 14825-21106 bp Feature: domain Description: YprA Location: 14906-15917 bp Feature: domain Description: YprA Location: 14906-15917 bp Feature: domain Description: YprA Location: 18008-18443 bp Feature: domain Description: YprA Location: 18008-18443 bp Feature: domain Description: YprA Location: 19781-20078 bp Feature: domain Description: YprA Location: 19781-2 0078 bp Feature: gene Location: 21103-22029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlbA_2 (pfam04326), TPR (smart00028), RVT-Retrons, YprA (COG1205)