myRT

myRT report for GCA_014222165.1_UMSL_Nostoc2RC_1.0

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Seq: JACKZU010000014.1 Nostoc sp. 2RC NODE_14_length_45875_cov_16.129, whole genome shotgun sequence (45875 bp)
Overview 1 RT 1: 6598-16570 bp Neighborhood of RT #1 [6598, 16593] RVT-Retrons SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 Feature: gene Location: 6598-7290 bp Feature: gene Location: 7805-8101 bp Feature: gene Location: 8248-9300 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8446-9055 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8446-9055 bp Feature: gene Location: 10055-11590 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 10088-10238 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1 0088-1 0238 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 10487-10595 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1 0487-1 0595 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 10907-11546 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1 0907-1 1 546 bp Feature: gene Location: 11662-16593 bp Feature: domain Description: DUF4011 Location: 11731-12220 bp Feature: domain Description: DUF401 1 Location: 1 1 731 -1 2220 bp Feature: domain Description: DEXXQc_SF1 Location: 12550-12832 bp Feature: domain Description: DEXXQc_SF1 Location: 1 2550-1 2832 bp Feature: domain Description: DEXXQc_SF1 Location: 14884-15613 bp Feature: domain Description: DEXXQc_SF1 Location: 1 4884-1 561 3 bp Feature: domain Description: TIGR00376 Location: 15763-16138 bp Feature: domain Description: TIGR00376 Location: 1 5763-1 61 38 bp Feature: domain Description: MTES_1575 Location: 16279-16570 bp Feature: domain Description: MTES_1 575 Location: 1 6279-1 6570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SPFH_eoslipins_u2 (cd13438), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741)

Seq: JACKZU010000015.1 Nostoc sp. 2RC NODE_15_length_43704_cov_12.8738, whole genome shotgun sequence (43704 bp)
Overview 1 RT 1: 30430-37396 bp Neighborhood of RT #1 [30430, 37396] HSP70_NBD RVT_N RVT-GII GIIM HNH Feature: gene Location: 30430-33402 bp Feature: domain Description: HSP70_NBD Location: 30901-32323 bp Feature: domain Description: HSP70_NBD Location: 30901-32 32 3 bp Feature: gene Location: 33558-34646 bp Feature: gene Location: 34740-36638 bp Feature: domain Description: RVT_N Location: 34785-35031 bp Feature: domain Description: RVT_N Location: 34785-35031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35073-35775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35073-35775 bp Feature: domain Description: GIIM Note: maturase Location: 35886-36105 bp Feature: domain Description: GIIM Note: maturase Location: 35886-36105 bp Feature: domain Description: HNH Note: nucleases Location: 36342-36477 bp Feature: domain Description: HNH Note: nucleases Location: 36342 -36477 bp Feature: gene Location: 36988-37191 bp Feature: gene Location: 37220-37396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HSP70_NBD (cd10170), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACKZU010000001.1 Nostoc sp. 2RC NODE_1_length_133698_cov_13.3204, whole genome shotgun sequence (133698 bp)
Overview 1 RT 1: 102703-107648 bp Neighborhood of RT #1 [102703, 107653] INT_Rci_Hp1_C RVT-UG7 XisH XisI Feature: gene Location: 102703-104004 bp Feature: domain Description: INT_Rci_Hp1_C Location: 103372-103840 bp Feature: domain Description: INT_Rci_Hp1_C Location: 103 3 72-103 840 bp Feature: gene Location: 104114-104425 bp Feature: gene Location: 104632-106551 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 105361-105769 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1053 61-105769 bp Feature: gene Location: 106914-107330 bp Feature: domain Description: XisH Location: 106917-107316 bp Feature: domain Description: XisH Location: 106917-1073 16 bp Feature: gene Location: 107318-107653 bp Feature: domain Description: XisI Location: 107321-107648 bp Feature: domain Description: XisI Location: 1073 21-107648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT-UG7, XisH (pfam08814), XisI (pfam08869)

Seq: JACKZU010000003.1 Nostoc sp. 2RC NODE_3_length_66603_cov_13.1037, whole genome shotgun sequence (66603 bp)
Overview 1 RT 1: 36771-46330 bp Neighborhood of RT #1 [36771, 46330] pPIWI_RE_X MID_pPIWI_RE RNaseH_pPIWI_RE pPIWI_RE_Z DEXDc RVT-UG7 Feature: gene Location: 36771-39992 bp Feature: domain Description: pPIWI_RE_X Location: 36942-38193 bp Feature: domain Description: pPIWI_RE_X Location: 3694 2-38193 bp Feature: domain Description: MID_pPIWI_RE Location: 38436-38916 bp Feature: domain Description: MID_pPIWI_RE Location: 384 36-38916 bp Feature: domain Description: RNaseH_pPIWI_RE Location: 38970-39945 bp Feature: domain Description: RNaseH_pPIWI_RE Location: 38970-3994 5 bp Feature: gene Location: 39995-43408 bp Feature: domain Description: pPIWI_RE_Z Location: 40007-40499 bp Feature: domain Description: pPIWI_RE_Z Location: 4 0007-4 04 99 bp Feature: domain Description: DEXDc Location: 40721-41381 bp Feature: domain Description: DEXDc Location: 4 0721-4 1381 bp Feature: gene Location: 43639-45024 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 43843-44266 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4 384 3-4 4 266 bp Feature: gene Location: 45420-45590 bp Feature: gene Location: 45767-46330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pPIWI_RE_X, MID_pPIWI_RE (pfam18157), RNaseH_pPIWI_RE, pPIWI_RE_Z (pfam18155), DEXDc (smart00487), RVT-UG7

Seq: JACKZU010000622.1 Nostoc sp. 2RC NODE_631_length_2466_cov_57.0117, whole genome shotgun sequence (2466 bp)
Overview 1 RT 1: 108-2284 bp Neighborhood of RT #1 [108, 2284] RVT_N RVT-GII GIIM McrA Feature: gene Location: 108-2003 bp Feature: domain Description: RVT_N Location: 279-525 bp Feature: domain Description: RVT_N Location: 279-5 25 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 567-1245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 67-1245 bp Feature: domain Description: GIIM Note: maturase Location: 1344-1578 bp Feature: domain Description: GIIM Note: maturase Location: 1344-15 78 bp Feature: domain Description: McrA Location: 1665-1944 bp Feature: domain Description: McrA Location: 1665 -1944 bp Feature: gene Location: 2060-2284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACKZU010000624.1 Nostoc sp. 2RC NODE_633_length_2463_cov_29.0063, whole genome shotgun sequence (2463 bp)
Overview 1 RT 1: 29-2222 bp Neighborhood of RT #1 [29, 2222] RVT_N RVT-GII GIIM McrA Feature: gene Location: 29-1825 bp Feature: domain Description: RVT_N Location: 65-311 bp Feature: domain Description: RVT_N Location: 6 5-311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-1049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-1049 bp Feature: domain Description: GIIM Note: maturase Location: 1151-1382 bp Feature: domain Description: GIIM Note: maturase Location: 1151-1382 bp Feature: domain Description: McrA Location: 1466-1748 bp Feature: domain Description: McrA Location: 146 6 -1748 bp Feature: gene Location: 1806-2222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)