myRT

myRT report for GCA_014222345.1_ASM1422234v1

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Seq: JAAROK010000012.1 Listeria booriae strain FSL L7-1834 NODE_12_length_56295_cov_44.240688, whole genome shotgun sequence (56295 bp)
Overview 1 RT 1: 6142-10449 bp Neighborhood of RT #1 [6142, 10469] HNH_repeat HNH_repeat RVT-Retrons PinE Feature: gene Location: 6142-6531 bp Feature: gene Location: 6540-7109 bp Feature: domain Description: HNH_repeat Location: 6594-6642 bp Feature: domain Description: HNH_repeat Location: 6594-6642 bp Feature: domain Description: HNH_repeat Location: 6753-6804 bp Feature: domain Description: HNH_repeat Location: 6753-6804 bp Feature: gene Location: 7650-9368 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7785-8385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7785-8385 bp Feature: gene Location: 9575-9730 bp Feature: gene Location: 9780-10469 bp Feature: domain Description: PinE Location: 9849-10449 bp Feature: domain Description: PinE Location: 9849-1 0449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH_repeat (pfam18780), RVT-Retrons, PinE (COG1961)

Seq: JAAROK010000028.1 Listeria booriae strain FSL L7-1834 NODE_28_length_1864_cov_207.105204, whole genome shotgun sequence (1864 bp)
Overview 1 RT 1: 82-1671 bp Neighborhood of RT #1 [82, 1671] RVT-GII GIIM Feature: gene Location: 82-1296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223-844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 3-844 bp Feature: domain Description: GIIM Note: maturase Location: 907-1126 bp Feature: domain Description: GIIM Note: maturase Location: 907-112 6 bp Feature: gene Location: 1339-1671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAROK010000005.1 Listeria booriae strain FSL L7-1834 NODE_5_length_269988_cov_29.088266, whole genome shotgun sequence (269988 bp)
Overview 1 RT 1: 265416-268946 bp Neighborhood of RT #1 [265416, 269803] PRK12997 PRK11709 RVT-AbiK Feature: gene Location: 265416-266846 bp Feature: domain Description: PRK12997 Location: 265437-266829 bp Feature: domain Description: PRK12997 Location: 26543 7-266829 bp Feature: gene Location: 266879-267943 bp Feature: domain Description: PRK11709 Location: 266882-267941 bp Feature: domain Description: PRK11709 Location: 266882-267941 bp Feature: gene Location: 268076-269803 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 268556-268946 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 268556-268946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12997 (PTS sugar transporter subunit IIC), PRK11709 (putative L-ascorbate 6-phosphate lactonase; Provisional), RVT-AbiK