myRT

myRT report for GCA_014226785.1_ASM1422678v1

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Seq: JAARWL010000001.1 Listeria innocua strain FSL L7-0795 NODE_1_length_680382_cov_61.678187, whole genome shotgun sequence (680382 bp)
Overview 1 RT 1: 526995-532518 bp Neighborhood of RT #1 [526995, 532529] ALDH_F6_MMSDH GlpR RVT-UG17 SLATT_5 Cass2 Feature: gene Location: 526995-528461 bp Feature: domain Description: ALDH_F6_MMSDH Location: 527019-528438 bp Feature: domain Description: ALDH_F6_MMSDH Location: 52701 9-528438 bp Feature: gene Location: 528637-529419 bp Feature: domain Description: GlpR Location: 528661-529402 bp Feature: domain Description: GlpR Location: 528661 -529402 bp Feature: gene Location: 529841-531157 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 530024-530597 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 530024-530597 bp Feature: gene Location: 531196-531795 bp Feature: domain Description: SLATT_5 Location: 531229-531775 bp Feature: domain Description: SLATT_5 Location: 531 229-531 775 bp Feature: gene Location: 532110-532529 bp Feature: domain Description: Cass2 Location: 532122-532518 bp Feature: domain Description: Cass2 Location: 5321 22-53251 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALDH_F6_MMSDH (cd07085), GlpR (COG1349), RVT-UG17, SLATT_5 (pfam18160), Cass2 (pfam14526)

Seq: JAARWL010000007.1 Listeria innocua strain FSL L7-0795 NODE_7_length_87031_cov_67.501323, whole genome shotgun sequence (87031 bp)
Overview 1 RT 1: 37837-43585 bp Neighborhood of RT #1 [37837, 43585] TpcC Lysozyme_like Spr RVT-GII HNHc Lysozyme_like Feature: gene Location: 37837-38754 bp Feature: domain Description: TpcC Location: 38071-38740 bp Feature: domain Description: TpcC Location: 38071-38740 bp Feature: gene Location: 38770-39420 bp Feature: domain Description: Lysozyme_like Location: 38776-39019 bp Feature: domain Description: Lysozyme_like Location: 38776-39019 bp Feature: domain Description: Spr Location: 39049-39400 bp Feature: domain Description: Spr Location: 39049-39400 bp Feature: gene Location: 39596-40324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39854-40019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39854-40019 bp Feature: domain Description: HNHc Note: nucleases Location: 40103-40208 bp Feature: domain Description: HNHc Note: nucleases Location: 40103-402 08 bp Feature: gene Location: 41031-41339 bp Feature: domain Description: Lysozyme_like Location: 41178-41319 bp Feature: domain Description: Lysozyme_like Location: 41178-41319 bp Feature: gene Location: 41336-43585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TpcC (pfam12642), Lysozyme_like (pfam13702), Spr (COG0791), RVT-GII, HNHc (smart00507)