myRT

myRT report for GCA_014228135.1_ASM1422813v1

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Seq: JAARXI010000001.1 Listeria booriae strain FSL L7-0360 NODE_1_length_622387_cov_35.605576, whole genome shotgun sequence (622387 bp)
Overview 1 RT 1: 371923-376393 bp Neighborhood of RT #1 [371923, 376393] Cah RVT-GII GIIM Feature: gene Location: 371923-372669 bp Feature: gene Location: 372725-373498 bp Feature: domain Description: Cah Location: 372779-373487 bp Feature: domain Description: Cah Location: 372779-373487 bp Feature: gene Location: 373832-375046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373973-374594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373973-374594 bp Feature: domain Description: GIIM Note: maturase Location: 374657-374876 bp Feature: domain Description: GIIM Note: maturase Location: 374657-374876 bp Feature: gene Location: 375089-375421 bp Feature: gene Location: 375671-376393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cah (COG3338), RVT-GII, GIIM (pfam08388)

Seq: JAARXI010000004.1 Listeria booriae strain FSL L7-0360 NODE_4_length_418404_cov_29.906126, whole genome shotgun sequence (418404 bp)
Overview 1 RT 1: 385409-390665 bp Neighborhood of RT #1 [385409, 390676] dxs RVT-Retrons IspA PRK14064 Feature: gene Location: 385409-387301 bp Feature: domain Description: dxs Location: 385418-387278 bp Feature: domain Description: dxs Location: 385418-3872 78 bp Feature: gene Location: 387445-387591 bp Feature: gene Location: 387790-389487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 387919-388519 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 387919-388519 bp Feature: gene Location: 389565-390446 bp Feature: domain Description: IspA Location: 389577-390369 bp Feature: domain Description: IspA Location: 389577-390369 bp Feature: gene Location: 390446-390676 bp Feature: domain Description: PRK14064 Location: 390449-390665 bp Feature: domain Description: PRK14064 Location: 390449-390665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dxs (TIGR00204), RVT-Retrons, IspA (pfam04279), PRK14064 (exodeoxyribonuclease VII small subunit; Provisional)

Seq: JAARXI010000009.1 Listeria booriae strain FSL L7-0360 NODE_9_length_149201_cov_42.794064, whole genome shotgun sequence (149201 bp)
Overview 1 RT 1: 136317-141818 bp Neighborhood of RT #1 [136317, 141818] KOG1803 DNA2 RVT-UG2 Feature: gene Location: 136317-139232 bp Feature: domain Description: KOG1803 Location: 137106-137334 bp Feature: domain Description: KOG1803 Location: 13 7106-13 73 3 4 bp Feature: domain Description: DNA2 Location: 138336-139170 bp Feature: domain Description: DNA2 Location: 13 83 3 6-13 9170 bp Feature: gene Location: 139337-139741 bp Feature: gene Location: 139713-140708 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 139890-140700 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 13 9890-140700 bp Feature: gene Location: 140873-141118 bp Feature: gene Location: 141522-141818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1803 (KOG1803, DNA helicase ), DNA2 (COG1112), RVT-UG2