myRT

myRT report for GCA_014229405.1_ASM1422940v1

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Seq: JAARZS010000020.1 Listeria booriae strain FSL L7-0054 NODE_20_length_58063_cov_24.771886, whole genome shotgun sequence (58063 bp)
Overview 1 RT 1: 23447-30660 bp Neighborhood of RT #1 [23447, 30660] SUKH_6 RVT-UG2 KOG1803 DNA2 Feature: gene Location: 23447-23890 bp Feature: domain Description: SUKH_6 Location: 23462-23870 bp Feature: domain Description: SUKH_6 Location: 23462-23870 bp Feature: gene Location: 24020-24277 bp Feature: gene Location: 24884-26254 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 25061-25928 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 25061 -25928 bp Feature: gene Location: 26360-29275 bp Feature: domain Description: KOG1803 Location: 27149-27380 bp Feature: domain Description: KOG1 803 Location: 271 49-27380 bp Feature: domain Description: DNA2 Location: 28379-29213 bp Feature: domain Description: DNA2 Location: 28379-2921 3 bp Feature: gene Location: 29410-30660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUKH_6 (pfam14568), RVT-UG2, KOG1803 (KOG1803, DNA helicase ), DNA2 (COG1112)

Seq: JAARZS010000026.1 Listeria booriae strain FSL L7-0054 NODE_26_length_46116_cov_23.751919, whole genome shotgun sequence (46116 bp)
Overview 1 RT 1: 1-1344 bp Neighborhood of RT #1 [1, 1361] RVT-GII InsE PHA02517 Feature: gene Location: 1-180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31-181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31-181 bp Feature: gene Location: 211-492 bp Feature: domain Description: InsE Location: 226-475 bp Feature: domain Description: InsE Location: 2 2 6-475 bp Feature: gene Location: 744-1361 bp Feature: domain Description: PHA02517 Location: 747-1344 bp Feature: domain Description: PHA02 517 Location: 747-1344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JAARZS010000027.1 Listeria booriae strain FSL L7-0054 NODE_27_length_45555_cov_33.238025, whole genome shotgun sequence (45555 bp)
Overview 1 RT 1: 42374-45550 bp Neighborhood of RT #1 [42374, 45552] PurR Cof RVT-GII Feature: gene Location: 42374-43435 bp Feature: domain Description: PurR Location: 42392-43427 bp Feature: domain Description: PurR Location: 423 92-43 427 bp Feature: gene Location: 43447-44259 bp Feature: domain Description: Cof Location: 43462-44251 bp Feature: domain Description: Cof Location: 43 462-44251 bp Feature: gene Location: 44800-45552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45010-45550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45010-45550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PurR (COG1609), Cof (COG0561), RVT-GII

Seq: JAARZS010000098.1 Listeria booriae strain FSL L7-0054 NODE_98_length_736_cov_276.688013, whole genome shotgun sequence (736 bp)
Overview 1 RT 1: 2-485 bp Neighborhood of RT #1 [2, 655] RVT-GII GIIM Feature: gene Location: 2-655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-203 bp Feature: domain Description: GIIM Note: maturase Location: 266-485 bp Feature: domain Description: GIIM Note: maturase Location: 266-4 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)