myRT

myRT report for GCA_014229465.1_ASM1422946v1

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Seq: JAASWV010000020.1 Listeria booriae strain FSL L7-0039 NODE_20_length_80114_cov_31.357496, whole genome shotgun sequence (80114 bp)
Overview 1 RT 1: 77817-80109 bp Neighborhood of RT #1 [77817, 80111] PHA02517 RVT-GII Feature: gene Location: 77817-78539 bp Feature: gene Location: 78754-79821 bp Feature: domain Description: PHA02517 Location: 79009-79804 bp Feature: domain Description: PHA0251 7 Location: 79009-79804 bp Feature: gene Location: 79935-80111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79989-80109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79989-801 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: JAASWV010000003.1 Listeria booriae strain FSL L7-0039 NODE_3_length_224328_cov_29.220289, whole genome shotgun sequence (224328 bp)
Overview 1 RT 1: 1-1185 bp Neighborhood of RT #1 [1, 1193] RVT-GII MarR Feature: gene Location: 1-255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 -2 50 bp Feature: gene Location: 250-564 bp Feature: gene Location: 789-1193 bp Feature: domain Description: MarR Location: 870-1185 bp Feature: domain Description: MarR Location: 870-1185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MarR (pfam01047)

Seq: JAASWV010000060.1 Listeria booriae strain FSL L7-0039 NODE_60_length_736_cov_246.247947, whole genome shotgun sequence (736 bp)
Overview 1 RT 1: 2-485 bp Neighborhood of RT #1 [2, 655] RVT-GII GIIM Feature: gene Location: 2-655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-203 bp Feature: domain Description: GIIM Note: maturase Location: 266-485 bp Feature: domain Description: GIIM Note: maturase Location: 266-485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAASWV010000006.1 Listeria booriae strain FSL L7-0039 NODE_6_length_186229_cov_34.104007, whole genome shotgun sequence (186229 bp)
Overview 1 RT 1: 60001-67214 bp Neighborhood of RT #1 [60001, 67214] SUKH_6 RVT-UG2 KOG1803 DNA2 Feature: gene Location: 60001-60444 bp Feature: domain Description: SUKH_6 Location: 60016-60424 bp Feature: domain Description: SUKH_6 Location: 60016-604 24 bp Feature: gene Location: 60574-60831 bp Feature: gene Location: 61438-62808 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 61615-62482 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 61615-624 82 bp Feature: gene Location: 62914-65829 bp Feature: domain Description: KOG1803 Location: 63703-63934 bp Feature: domain Description: KOG1803 Location: 63703-63934 bp Feature: domain Description: DNA2 Location: 64933-65767 bp Feature: domain Description: DNA2 Location: 64 933-65767 bp Feature: gene Location: 65976-67214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUKH_6 (pfam14568), RVT-UG2, KOG1803 (KOG1803, DNA helicase ), DNA2 (COG1112)