myRT

myRT report for GCA_014230115.1_ASM1423011v1

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Seq: JACJDF010000004.1 Rhodococcus wratislaviensis strain 3A Joined_contig_1, whole genome shotgun sequence (7733895 bp)
Overview 1 RT 1: 29310-35319 bp 2 RT 2: 101911-106456 bp 3 RT 3: 7698560-7705228 bp Neighborhood of RT #1 [29310, 35336] HTH_32 RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like RVT-GII Nterm_IS4 DDE_Tnp_1 PRK07851 Neighborhood of RT #2 [101911, 106461] DDE_5 RVT-GII GIIM DEDD_Tnp_IS110 Neighborhood of RT #3 [7698560, 7705228] PRK07851 Nterm_IS4 DDE_Tnp_1 RVT-GII Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM HTH_32 Feature: gene Location: 29310-29678 bp Feature: domain Description: HTH_32 Location: 29382-29538 bp Feature: domain Description: HTH_32 Location: 29382-29538 bp Feature: gene Location: 29756-30001 bp Feature: gene Location: 30126-30665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30132-30288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 32-30288 bp Feature: domain Description: GIIM Note: maturase Location: 30372-30603 bp Feature: domain Description: GIIM Note: maturase Location: 30372-30603 bp Feature: gene Location: 30820-31779 bp Feature: domain Description: Phage_int_SAM_1 Location: 30856-31102 bp Feature: domain Description: Phage_int_SAM_1 Location: 30856-31 1 02 bp Feature: domain Description: INT_RitC_C_like Location: 31192-31702 bp Feature: domain Description: INT_RitC_C_like Location: 31 1 92-31 702 bp Feature: gene Location: 31776-32561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31986-32469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 986-32469 bp Feature: gene Location: 33219-34406 bp Feature: domain Description: Nterm_IS4 Location: 33258-33549 bp Feature: domain Description: Nterm_IS4 Location: 33258-33549 bp Feature: domain Description: DDE_Tnp_1 Location: 33603-34278 bp Feature: domain Description: DDE_Tnp_1 Location: 33603-34278 bp Feature: gene Location: 34896-35336 bp Feature: domain Description: PRK07851 Location: 34899-35319 bp Feature: domain Description: PRK07851 Location: 34899-3531 9 bp Feature: gene Location: 101911-102915 bp Feature: gene Location: 103297-104553 bp Feature: domain Description: DDE_5 Location: 103357-104167 bp Feature: domain Description: DDE_5 Location: 1 03357-1 041 67 bp Feature: gene Location: 104808-105539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104811-105108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0481 1 -1 051 08 bp Feature: domain Description: GIIM Note: maturase Location: 105195-105405 bp Feature: domain Description: GIIM Note: maturase Location: 1 051 95-1 05405 bp Feature: gene Location: 105536-105676 bp Feature: gene Location: 106198-106461 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 106201-106456 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 06201 -1 06456 bp Feature: gene Location: 7698560-7699000 bp Feature: domain Description: PRK07851 Location: 7698563-7698983 bp Feature: domain Description: PRK07851 Location: 7698563-7698983 bp Feature: gene Location: 7699490-7700677 bp Feature: domain Description: Nterm_IS4 Location: 7699529-7699820 bp Feature: domain Description: Nterm_IS4 Location: 7699529-7699820 bp Feature: domain Description: DDE_Tnp_1 Location: 7699874-7700549 bp Feature: domain Description: DDE_Tnp_1 Location: 7699874-7700549 bp Feature: gene Location: 7701335-7702120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7701545-7702028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7701 545-7702028 bp Feature: gene Location: 7702117-7703076 bp Feature: domain Description: Phage_int_SAM_1 Location: 7702153-7702399 bp Feature: domain Description: Phage_int_SAM_1 Location: 77021 53-7702399 bp Feature: domain Description: INT_RitC_C_like Location: 7702489-7702999 bp Feature: domain Description: INT_RitC_C_like Location: 7702489-7702999 bp Feature: gene Location: 7703219-7703770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7703222-7703393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7703222-7703393 bp Feature: domain Description: GIIM Note: maturase Location: 7703477-7703708 bp Feature: domain Description: GIIM Note: maturase Location: 7703477-7703708 bp Feature: gene Location: 7704218-7704586 bp Feature: domain Description: HTH_32 Location: 7704290-7704446 bp Feature: domain Description: HTH_32 Location: 7704290-7704446 bp Feature: gene Location: 7704857-7705228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), PRK07851 (acetyl-CoA C-acetyltransferase), DDE_5 (pfam13546), DEDD_Tnp_IS110 (pfam01548)