myRT

myRT report for GCA_014230305.1_ASM1423030v1

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Seq: JACLAU010000023.1 Novosphingobium flavum strain 4Y4 NODE_23_length_54163_cov_66.273614, whole genome shotgun sequence (54163 bp)
Overview 1 RT 1: 36445-40261 bp Neighborhood of RT #1 [36445, 40261] TraU RVT-GII GIIM TrbC_Ftype Feature: gene Location: 36445-36627 bp Feature: gene Location: 36626-37405 bp Feature: domain Description: TraU Location: 36629-37331 bp Feature: domain Description: TraU Location: 36629-37331 bp Feature: gene Location: 37712-39334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38051-38792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38051 -38792 bp Feature: domain Description: GIIM Note: maturase Location: 38870-39080 bp Feature: domain Description: GIIM Note: maturase Location: 38870-39080 bp Feature: gene Location: 39385-40095 bp Feature: domain Description: TrbC_Ftype Location: 39694-40024 bp Feature: domain Description: TrbC_Ftype Location: 39694-40024 bp Feature: gene Location: 40118-40261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraU (pfam06834), RVT-GII, GIIM (pfam08388), TrbC_Ftype (TIGR02742)

Seq: JACLAU010000042.1 Novosphingobium flavum strain 4Y4 NODE_42_length_27767_cov_64.046382, whole genome shotgun sequence (27767 bp)
Overview 1 RT 1: 9599-16012 bp Neighborhood of RT #1 [9599, 16059] GIY-YIG_unchar_2 DUF4357 COG0610 RVT-UG7 DUF3606 Feature: gene Location: 9599-10558 bp Feature: domain Description: GIY-YIG_unchar_2 Location: 9761-9992 bp Feature: domain Description: GIY-YIG_unchar_2 Location: 9761-9992 bp Feature: domain Description: DUF4357 Location: 10331-10490 bp Feature: domain Description: DUF4357 Location: 10331-10490 bp Feature: gene Location: 10683-11723 bp Feature: domain Description: COG0610 Location: 10686-11100 bp Feature: domain Description: COG0610 Location: 10686-11100 bp Feature: gene Location: 11766-13343 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 12195-12576 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 12 195-12 576 bp Feature: gene Location: 13846-15828 bp Feature: gene Location: 15850-16059 bp Feature: domain Description: DUF3606 Location: 15862-16012 bp Feature: domain Description: DUF3606 Location: 15862 -16012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIY-YIG_unchar_2 (cd10447), DUF4357 (pfam14267), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG7, DUF3606 (pfam12244)

Seq: JACLAU010000068.1 Novosphingobium flavum strain 4Y4 NODE_68_length_9288_cov_118.864753, whole genome shotgun sequence (9191 bp)
Overview 1 RT 1: 617-5964 bp Neighborhood of RT #1 [617, 5964] RVT-GII Intron_maturas2 HNHc xerC xerC xerC Feature: gene Location: 617-2500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1754 bp Feature: domain Description: Intron_maturas2 Location: 1841-2123 bp Feature: domain Description: Intron_maturas2 Location: 1841-2123 bp Feature: domain Description: HNHc Note: nucleases Location: 2273-2447 bp Feature: domain Description: HNHc Note: nucleases Location: 2273 -2447 bp Feature: gene Location: 2735-4177 bp Feature: domain Description: xerC Location: 2888-3626 bp Feature: domain Description: xerC Location: 2888-3 626 bp Feature: domain Description: xerC Location: 3797-3953 bp Feature: domain Description: xerC Location: 3 797-3 953 bp Feature: domain Description: xerC Location: 4028-4094 bp Feature: domain Description: xerC Location: 4028-4094 bp Feature: gene Location: 4366-5964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), xerC (PRK01287)