myRT

myRT report for GCA_014230585.1_ASM1423058v1

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Seq: JAAZWT010000016.1 Clostridium saccharobutylicum strain DJ007 NODE_16_length_81662_cov_33.388871, whole genome shotgun sequence (81662 bp)
Overview 1 RT 1: 55746-58908 bp Neighborhood of RT #1 [55746, 58946] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 55746-55880 bp Feature: gene Location: 56348-56755 bp Feature: gene Location: 57189-57827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57525-57708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57525-57708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57711-57816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5771 1 -5781 6 bp Feature: gene Location: 58298-58648 bp Feature: gene Location: 58740-58946 bp Feature: domain Description: DDE_Tnp_1 Location: 58770-58908 bp Feature: domain Description: DDE_Tnp_1 Location: 58770-58908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JAAZWT010000036.1 Clostridium saccharobutylicum strain DJ007 NODE_36_length_46787_cov_31.760972, whole genome shotgun sequence (46787 bp)
Overview 1 RT 1: 2646-10555 bp Neighborhood of RT #1 [2646, 10555] UvrD UvrD RVT-Retrons Enpp Feature: gene Location: 2646-5213 bp Feature: domain Description: UvrD Location: 3168-4296 bp Feature: domain Description: UvrD Location: 3168-42 96 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: gene Location: 5499-6506 bp Feature: gene Location: 6718-7842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: gene Location: 8144-9448 bp Feature: domain Description: Enpp Location: 8162-9398 bp Feature: domain Description: Enpp Location: 8162 -9398 bp Feature: gene Location: 10019-10555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018)

Seq: JAAZWT010000046.1 Clostridium saccharobutylicum strain DJ007 NODE_46_length_25978_cov_52.131771, whole genome shotgun sequence (25978 bp)
Overview 1 RT 1: 22386-25935 bp Neighborhood of RT #1 [22386, 25955] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 Feature: gene Location: 22386-22652 bp Feature: domain Description: plantaricin Location: 22407-22650 bp Feature: domain Description: plantaricin Location: 22407-22650 bp Feature: gene Location: 22697-22963 bp Feature: domain Description: plantaricin Location: 22718-22961 bp Feature: domain Description: plantaricin Location: 22718-22961 bp Feature: gene Location: 23037-24572 bp Feature: RT Description: RVT_N Location: 23109-23352 bp Feature: RT Description: RVT_N Location: 23 109-23 3 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23397-24057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 3 97-24057 bp Feature: domain Description: GIIM Note: maturase Location: 24108-24345 bp Feature: domain Description: GIIM Note: maturase Location: 24108-243 45 bp Feature: domain Description: rve_2 Location: 24489-24564 bp Feature: domain Description: rve_2 Location: 24489-24564 bp Feature: gene Location: 25098-25955 bp Feature: domain Description: PHA02517 Location: 25386-25935 bp Feature: domain Description: PHA02517 Location: 253 86-2593 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JAAZWT010000005.1 Clostridium saccharobutylicum strain DJ007 NODE_5_length_227518_cov_30.839369, whole genome shotgun sequence (227518 bp)
Overview 1 RT 1: 76735-85453 bp Neighborhood of RT #1 [76735, 85453] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Feature: gene Location: 76735-77262 bp Feature: domain Description: Sig70_famx3 Location: 76741-77224 bp Feature: domain Description: Sig70_famx3 Location: 7674 1-77224 bp Feature: gene Location: 77481-78506 bp Feature: domain Description: DUF1835 Location: 77496-77865 bp Feature: domain Description: DUF1835 Location: 774 96-77865 bp Feature: domain Description: DUF3658 Location: 77955-78267 bp Feature: domain Description: DUF3658 Location: 77955-78267 bp Feature: gene Location: 79094-80599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79730-80372 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79730-80372 bp Feature: gene Location: 80596-82404 bp Feature: gene Location: 82406-85453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395), RVT-Retrons