myRT

myRT report for GCA_014230605.1_ASM1423060v1

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Seq: JABAEA010000001.1 Clostridium beijerinckii strain DJ008 NODE_1_length_443009_cov_27.666816, whole genome shotgun sequence (443009 bp)
Overview 1 RT 1: 45339-49211 bp Neighborhood of RT #1 [45339, 49211] HTH_XRE RVT-Retrons HSDR_N_2 XerC Feature: gene Location: 45339-45533 bp Feature: gene Location: 45611-45901 bp Feature: domain Description: HTH_XRE Location: 45629-45785 bp Feature: domain Description: HTH_XRE Location: 45629-45785 bp Feature: gene Location: 45894-46823 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46056-46584 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46056-46584 bp Feature: gene Location: 47110-48549 bp Feature: domain Description: HSDR_N_2 Location: 47200-47452 bp Feature: domain Description: HSDR_N_2 Location: 47200-47452 bp Feature: domain Description: XerC Location: 47641-48283 bp Feature: domain Description: XerC Location: 47641 -48283 bp Feature: gene Location: 48798-49211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, HSDR_N_2 (pfam13588), XerC (COG4973)

Seq: JABAEA010000067.1 Clostridium beijerinckii strain DJ008 NODE_67_length_5851_cov_6.135781, whole genome shotgun sequence (5851 bp)
Overview 1 RT 1: 3-5850 bp Neighborhood of RT #1 [3, 5849] PRK02971 RVT-GII RVT-GII RVT-GII GIIM RVT-GII GIIM PBP2_NikA_DppA_OppA_like_19 Feature: gene Location: 3-206 bp Feature: domain Description: PRK02971 Location: 6-201 bp Feature: domain Description: PRK02 971 Location: 6-2 01 bp Feature: gene Location: 241-465 bp Feature: gene Location: 676-1263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1021-1252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 1-12 52 bp Feature: gene Location: 1489-1740 bp Feature: gene Location: 1747-2805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2002-2686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 002 -2 686 bp Feature: gene Location: 2893-3036 bp Feature: gene Location: 3169-3963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3172-3577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3172 -3577 bp Feature: domain Description: GIIM Note: maturase Location: 3658-3889 bp Feature: domain Description: GIIM Note: maturase Location: 3658-3889 bp Feature: gene Location: 4082-4633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4085-4187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4085-4187 bp Feature: domain Description: GIIM Note: maturase Location: 4241-4472 bp Feature: domain Description: GIIM Note: maturase Location: 42 41-4472 bp Feature: gene Location: 5016-5849 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_19 Location: 5169-5850 bp Feature: domain Description: PBP2 _NikA_DppA_OppA_like_19 Location: 5169-5850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK02971 (4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional), GIIM (pfam08388), PBP2_NikA_DppA_OppA_like_19 (cd08518)