myRT

myRT report for GCA_014230655.1_ASM1423065v1

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Seq: JABAGV010000012.1 Clostridium beijerinckii strain DJ015 NODE_12_length_95685_cov_57.974239, whole genome shotgun sequence (95685 bp)
Overview 1 RT 1: 51152-54693 bp Neighborhood of RT #1 [51152, 54693] RVT-UG2 COG4185 Feature: gene Location: 51152-51391 bp Feature: gene Location: 51587-51745 bp Feature: gene Location: 52150-53463 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 52342-53164 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 52342-531 64 bp Feature: gene Location: 53954-54520 bp Feature: domain Description: COG4185 Location: 53957-54512 bp Feature: domain Description: COG41 85 Location: 53957-5451 2 bp Feature: gene Location: 54520-54693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, COG4185 (Predicted ABC-type ATPase )

Seq: JABAGV010000163.1 Clostridium beijerinckii strain DJ015 NODE_163_length_3169_cov_1.902005, whole genome shotgun sequence (3169 bp)
Overview 1 RT 1: 1040-3169 bp Neighborhood of RT #1 [1040, 3168] HTH_28 HTH_28 HTH_28 RVT_N RVT-GII Feature: gene Location: 1040-1723 bp Feature: domain Description: HTH_28 Location: 1073-1220 bp Feature: domain Description: HTH_2 8 Location: 1073-12 2 0 bp Feature: domain Description: HTH_28 Location: 1247-1364 bp Feature: domain Description: HTH_2 8 Location: 12 47-1364 bp Feature: domain Description: HTH_28 Location: 1436-1592 bp Feature: domain Description: HTH_2 8 Location: 1436-1592 bp Feature: gene Location: 1852-2001 bp Feature: gene Location: 2647-3168 bp Feature: domain Description: RVT_N Location: 2719-2959 bp Feature: domain Description: RVT_N Location: 2 719-2 959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3019-3169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3019-3169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT_N (pfam13655), RVT-GII

Seq: JABAGV010000201.1 Clostridium beijerinckii strain DJ015 NODE_201_length_2189_cov_6.229640, whole genome shotgun sequence (2189 bp)
Overview 1 RT 1: 510-1764 bp Neighborhood of RT #1 [510, 1925] RVT-GII GIIM Feature: gene Location: 510-1925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 867-1485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 867-1485 bp Feature: domain Description: GIIM Note: maturase Location: 1536-1764 bp Feature: domain Description: GIIM Note: maturase Location: 153 6-1764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABAGV010000299.1 Clostridium beijerinckii strain DJ015 NODE_299_length_1508_cov_1.731656, whole genome shotgun sequence (1508 bp)
Overview 1 RT 1: 2-1169 bp Neighborhood of RT #1 [2, 1285] RVT-GII GIIM McrA Feature: gene Location: 2-1285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17-476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17-4 76 bp Feature: domain Description: GIIM Note: maturase Location: 539-773 bp Feature: domain Description: GIIM Note: maturase Location: 539-773 bp Feature: domain Description: McrA Location: 944-1169 bp Feature: domain Description: McrA Location: 94 4 -1169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JABAGV010000002.1 Clostridium beijerinckii strain DJ015 NODE_2_length_153743_cov_50.227168, whole genome shotgun sequence (153743 bp)
Overview 1 RT 1: 129723-140798 bp Neighborhood of RT #1 [129723, 141466] RVT-UG5 COG0610 Feature: gene Location: 129723-132206 bp Feature: gene Location: 132359-133300 bp Feature: gene Location: 133319-137053 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 133778-134219 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 133778-134219 bp Feature: gene Location: 137716-137925 bp Feature: gene Location: 138380-141466 bp Feature: domain Description: COG0610 Location: 138407-140798 bp Feature: domain Description: COG0610 Location: 138407-140798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )

Seq: JABAGV010000030.1 Clostridium beijerinckii strain DJ015 NODE_30_length_56256_cov_62.193150, whole genome shotgun sequence (56256 bp)
Overview 1 RT 1: 19454-24685 bp Neighborhood of RT #1 [19454, 25587] HTH_XRE RVT-UG12 ComA-like_MBL-fold Feature: gene Location: 19454-19981 bp Feature: domain Description: HTH_XRE Location: 19466-19637 bp Feature: domain Description: HTH_XRE Location: 1946 6 -196 37 bp Feature: gene Location: 20348-21073 bp Feature: gene Location: 21147-22673 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 21489-21933 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 21489-21933 bp Feature: gene Location: 22883-24091 bp Feature: gene Location: 24418-25587 bp Feature: domain Description: ComA-like_MBL-fold Location: 24439-24685 bp Feature: domain Description: ComA-like_MBL-fold Location: 24439-246 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-UG12, ComA-like_MBL-fold (cd07731)

Seq: JABAGV010000351.1 Clostridium beijerinckii strain DJ015 NODE_351_length_1407_cov_383.881955, whole genome shotgun sequence (1407 bp)
Overview 1 RT 1: 3-867 bp Neighborhood of RT #1 [3, 872] RVT-GII Feature: gene Location: 3-872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII