myRT

myRT report for GCA_014230695.1_ASM1423069v1

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Seq: JABAEN010000024.1 Clostridium saccharobutylicum strain DJ021 NODE_24_length_70855_cov_21.632188, whole genome shotgun sequence (70855 bp)
Overview 1 RT 1: 44939-48101 bp Neighborhood of RT #1 [44939, 48139] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 44939-45073 bp Feature: gene Location: 45541-45948 bp Feature: gene Location: 46382-47020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46718-46901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4671 8-46901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46904-47009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46904-47009 bp Feature: gene Location: 47491-47841 bp Feature: gene Location: 47933-48139 bp Feature: domain Description: DDE_Tnp_1 Location: 47963-48101 bp Feature: domain Description: DDE_Tnp_1 Location: 47963-481 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JABAEN010000040.1 Clostridium saccharobutylicum strain DJ021 NODE_40_length_46788_cov_18.098906, whole genome shotgun sequence (46788 bp)
Overview 1 RT 1: 2646-10555 bp Neighborhood of RT #1 [2646, 10555] UvrD UvrD RVT-Retrons Enpp Feature: gene Location: 2646-5213 bp Feature: domain Description: UvrD Location: 3168-4296 bp Feature: domain Description: UvrD Location: 3168-42 96 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: gene Location: 5499-6506 bp Feature: gene Location: 6718-7842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: gene Location: 8144-9448 bp Feature: domain Description: Enpp Location: 8162-9398 bp Feature: domain Description: Enpp Location: 8162 -9398 bp Feature: gene Location: 10019-10555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018)

Seq: JABAEN010000053.1 Clostridium saccharobutylicum strain DJ021 NODE_53_length_25978_cov_28.468592, whole genome shotgun sequence (25978 bp)
Overview 1 RT 1: 22386-25935 bp Neighborhood of RT #1 [22386, 25955] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 Feature: gene Location: 22386-22652 bp Feature: domain Description: plantaricin Location: 22407-22650 bp Feature: domain Description: plantaricin Location: 22407-22650 bp Feature: gene Location: 22697-22963 bp Feature: domain Description: plantaricin Location: 22718-22961 bp Feature: domain Description: plantaricin Location: 22718-22961 bp Feature: gene Location: 23037-24572 bp Feature: RT Description: RVT_N Location: 23109-23352 bp Feature: RT Description: RVT_N Location: 23 109-23 3 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23397-24057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 3 97-24057 bp Feature: domain Description: GIIM Note: maturase Location: 24108-24345 bp Feature: domain Description: GIIM Note: maturase Location: 24108-243 45 bp Feature: domain Description: rve_2 Location: 24489-24564 bp Feature: domain Description: rve_2 Location: 24489-24564 bp Feature: gene Location: 25098-25955 bp Feature: domain Description: PHA02517 Location: 25386-25935 bp Feature: domain Description: PHA02517 Location: 253 86-2593 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JABAEN010000006.1 Clostridium saccharobutylicum strain DJ021 NODE_6_length_175167_cov_18.388240, whole genome shotgun sequence (175167 bp)
Overview 1 RT 1: 141801-150481 bp Neighborhood of RT #1 [141801, 150519] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Feature: gene Location: 141801-144848 bp Feature: gene Location: 144850-146658 bp Feature: gene Location: 146655-148160 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147291-147933 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 7291-14 7933 bp Feature: gene Location: 148748-149773 bp Feature: domain Description: DUF1835 Location: 148763-149132 bp Feature: domain Description: DUF1835 Location: 14 8763-14 9132 bp Feature: domain Description: DUF3658 Location: 149222-149534 bp Feature: domain Description: DUF3658 Location: 14 9222-14 9534 bp Feature: gene Location: 149992-150519 bp Feature: domain Description: Sig70_famx3 Location: 149998-150481 bp Feature: domain Description: Sig70_famx3 Location: 14 9998-1504 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954)