myRT

myRT report for GCA_014230745.1_ASM1423074v1

Download annotations/find similar RTs

Seq: JABAGW010000013.1 Clostridium beijerinckii strain DJ083 NODE_13_length_98344_cov_84.194491, whole genome shotgun sequence (98344 bp)
Overview 1 RT 1: 19597-24828 bp Neighborhood of RT #1 [19597, 25730] HTH_XRE RVT-UG12 ComA-like_MBL-fold Feature: gene Location: 19597-20124 bp Feature: domain Description: HTH_XRE Location: 19609-19780 bp Feature: domain Description: HTH_XRE Location: 1 9609-1 9780 bp Feature: gene Location: 20491-21216 bp Feature: gene Location: 21290-22816 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 21632-22076 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 21 632-22076 bp Feature: gene Location: 23026-24234 bp Feature: gene Location: 24561-25730 bp Feature: domain Description: ComA-like_MBL-fold Location: 24582-24828 bp Feature: domain Description: ComA-like_MBL-fold Location: 24582-24828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-UG12, ComA-like_MBL-fold (cd07731)

Seq: JABAGW010000016.1 Clostridium beijerinckii strain DJ083 NODE_16_length_95684_cov_53.732481, whole genome shotgun sequence (95684 bp)
Overview 1 RT 1: 51152-54693 bp Neighborhood of RT #1 [51152, 54693] RVT-UG2 COG4185 Feature: gene Location: 51152-51391 bp Feature: gene Location: 51587-51745 bp Feature: gene Location: 52150-53463 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 52342-53164 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 52 342 -53164 bp Feature: gene Location: 53954-54520 bp Feature: domain Description: COG4185 Location: 53957-54512 bp Feature: domain Description: COG4185 Location: 53957-54512 bp Feature: gene Location: 54520-54693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, COG4185 (Predicted ABC-type ATPase )

Seq: JABAGW010000182.1 Clostridium beijerinckii strain DJ083 NODE_182_length_1407_cov_315.607519, whole genome shotgun sequence (1407 bp)
Overview 1 RT 1: 3-867 bp Neighborhood of RT #1 [3, 872] RVT-GII Feature: gene Location: 3-872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABAGW010000035.1 Clostridium beijerinckii strain DJ083 NODE_35_length_47236_cov_35.814076, whole genome shotgun sequence (47236 bp)
Overview 1 RT 1: 12278-24021 bp Neighborhood of RT #1 [12278, 24021] COG0610 RVT-UG5 Feature: gene Location: 12278-15364 bp Feature: domain Description: COG0610 Location: 12305-14696 bp Feature: domain Description: COG0610 Location: 12305-14 696 bp Feature: gene Location: 15819-16028 bp Feature: gene Location: 16691-20425 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 17150-17591 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 17150-17591 bp Feature: gene Location: 20444-21385 bp Feature: gene Location: 21538-24021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG5