myRT

myRT report for GCA_014230785.1_ASM1423078v1

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Seq: JABAES010000015.1 Clostridium saccharobutylicum strain DJ090 NODE_15_length_81662_cov_26.585316, whole genome shotgun sequence (81662 bp)
Overview 1 RT 1: 55746-58908 bp Neighborhood of RT #1 [55746, 58946] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 55746-55880 bp Feature: gene Location: 56348-56755 bp Feature: gene Location: 57189-57827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57525-57708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57525-57708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57711-57816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5771 1 -5781 6 bp Feature: gene Location: 58298-58648 bp Feature: gene Location: 58740-58946 bp Feature: domain Description: DDE_Tnp_1 Location: 58770-58908 bp Feature: domain Description: DDE_Tnp_1 Location: 58770-58908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JABAES010000036.1 Clostridium saccharobutylicum strain DJ090 NODE_36_length_46787_cov_25.238107, whole genome shotgun sequence (46787 bp)
Overview 1 RT 1: 2646-10555 bp Neighborhood of RT #1 [2646, 10555] UvrD UvrD RVT-Retrons Enpp Feature: gene Location: 2646-5213 bp Feature: domain Description: UvrD Location: 3168-4296 bp Feature: domain Description: UvrD Location: 3168-42 96 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: gene Location: 5499-6506 bp Feature: gene Location: 6718-7842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: gene Location: 8144-9448 bp Feature: domain Description: Enpp Location: 8162-9398 bp Feature: domain Description: Enpp Location: 8162 -9398 bp Feature: gene Location: 10019-10555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018)

Seq: JABAES010000005.1 Clostridium saccharobutylicum strain DJ090 NODE_5_length_227516_cov_23.830517, whole genome shotgun sequence (227516 bp)
Overview 1 RT 1: 142064-150744 bp Neighborhood of RT #1 [142064, 150782] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Feature: gene Location: 142064-145111 bp Feature: gene Location: 145113-146921 bp Feature: gene Location: 146918-148423 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147554-148196 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147554-148196 bp Feature: gene Location: 149011-150036 bp Feature: domain Description: DUF1835 Location: 149026-149395 bp Feature: domain Description: DUF183 5 Location: 149026-1493 95 bp Feature: domain Description: DUF3658 Location: 149485-149797 bp Feature: domain Description: DUF3 658 Location: 149485-149797 bp Feature: gene Location: 150255-150782 bp Feature: domain Description: Sig70_famx3 Location: 150261-150744 bp Feature: domain Description: Sig70_famx3 Location: 150261-150744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954)

Seq: JABAES010000073.1 Clostridium saccharobutylicum strain DJ090 NODE_73_length_3108_cov_51.052788, whole genome shotgun sequence (3108 bp)
Overview 1 RT 1: 66-2934 bp Neighborhood of RT #1 [66, 2942] PHA02517 RVT_N RVT-GII GIIM rve_2 Feature: gene Location: 66-881 bp Feature: domain Description: PHA02517 Location: 312-861 bp Feature: domain Description: PHA02517 Location: 312-861 bp Feature: gene Location: 1407-2942 bp Feature: RT Description: RVT_N Location: 1479-1722 bp Feature: RT Description: RVT_N Location: 14 79-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-2427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-24 27 bp Feature: domain Description: GIIM Note: maturase Location: 2478-2715 bp Feature: domain Description: GIIM Note: maturase Location: 24 78-2715 bp Feature: domain Description: rve_2 Location: 2859-2934 bp Feature: domain Description: rve_2 Location: 2859-2934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed)