myRT

myRT report for GCA_014230825.1_ASM1423082v1

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Seq: JABAET010000015.1 Clostridium saccharobutylicum strain DJ099 NODE_15_length_81665_cov_58.843764, whole genome shotgun sequence (81665 bp)
Overview 1 RT 1: 55749-58911 bp Neighborhood of RT #1 [55749, 58949] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 55749-55883 bp Feature: gene Location: 56351-56758 bp Feature: gene Location: 57192-57830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57528-57711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57528-5771 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57714-57819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5771 4-5781 9 bp Feature: gene Location: 58301-58651 bp Feature: gene Location: 58743-58949 bp Feature: domain Description: DDE_Tnp_1 Location: 58773-58911 bp Feature: domain Description: DDE_Tnp_1 Location: 58773-5891 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JABAET010000035.1 Clostridium saccharobutylicum strain DJ099 NODE_35_length_46787_cov_46.477243, whole genome shotgun sequence (46787 bp)
Overview 1 RT 1: 36233-43642 bp Neighborhood of RT #1 [36233, 44142] Enpp RVT-Retrons UvrD UvrD Feature: gene Location: 36233-36769 bp Feature: gene Location: 37340-38644 bp Feature: domain Description: Enpp Location: 37358-38594 bp Feature: domain Description: Enpp Location: 37358-38594 bp Feature: gene Location: 38946-40070 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39162-39720 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39162 -3972 0 bp Feature: gene Location: 40282-41289 bp Feature: gene Location: 41575-44142 bp Feature: domain Description: UvrD Location: 42097-43225 bp Feature: domain Description: UvrD Location: 42 097-432 2 5 bp Feature: domain Description: UvrD Location: 43402-43642 bp Feature: domain Description: UvrD Location: 43402 -43642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Enpp (cd16018), RVT-Retrons, UvrD (COG0210)

Seq: JABAET010000066.1 Clostridium saccharobutylicum strain DJ099 NODE_66_length_3108_cov_234.227318, whole genome shotgun sequence (3108 bp)
Overview 1 RT 1: 66-2934 bp Neighborhood of RT #1 [66, 2942] PHA02517 RVT_N RVT-GII GIIM rve_2 Feature: gene Location: 66-881 bp Feature: domain Description: PHA02517 Location: 312-861 bp Feature: domain Description: PHA02517 Location: 3 12-861 bp Feature: gene Location: 1407-2942 bp Feature: RT Description: RVT_N Location: 1479-1722 bp Feature: RT Description: RVT_N Location: 1479-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-2427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-2427 bp Feature: domain Description: GIIM Note: maturase Location: 2478-2715 bp Feature: domain Description: GIIM Note: maturase Location: 2478-2715 bp Feature: domain Description: rve_2 Location: 2859-2934 bp Feature: domain Description: rve_2 Location: 2859-293 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JABAET010000006.1 Clostridium saccharobutylicum strain DJ099 NODE_6_length_227357_cov_43.673671, whole genome shotgun sequence (227357 bp)
Overview 1 RT 1: 141905-150585 bp Neighborhood of RT #1 [141905, 150623] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Feature: gene Location: 141905-144952 bp Feature: gene Location: 144954-146762 bp Feature: gene Location: 146759-148264 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147395-148037 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 7395-14 8037 bp Feature: gene Location: 148852-149877 bp Feature: domain Description: DUF1835 Location: 148867-149236 bp Feature: domain Description: DUF1835 Location: 14 8867-14 9236 bp Feature: domain Description: DUF3658 Location: 149326-149638 bp Feature: domain Description: DUF3658 Location: 14 9326-14 9638 bp Feature: gene Location: 150096-150623 bp Feature: domain Description: Sig70_famx3 Location: 150102-150585 bp Feature: domain Description: Sig70_famx3 Location: 150102-150585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954)